Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01221 ATGAATAGAGAAATTGAAATTCTGTCTCCGGCTTCCTATATCGAAAATTCGAACTGGTTGTTTCAAGAAAACAAGGGTTCTAAGTGGACTCAAGAAGAGAACAAACTGTTTGAGAATGCTTTGGCTTACTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCAGAGATGATTCCCGGAAAAACTGTAGGTGATGTGATTAAGCAGTATAGGGAGCTTGAAGAAGATGTTTGTGTTATTGAAGCAGGTTTGATACCGGTTCCTGGTTATACAACTAGTTCTTTCACATTGGATTGGGCTAATGATGAAGGGTATGATGAGTTCAAGCAGTTTTGCAGTGTTGGTGGGAAAAGGAGTGGTTCGACTCGACCGTCTGAGCAGGAGAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTCTGCTGGGTCTGAAGAAGTATGGTAAGGGGGACTGGCGAAACATCTCTCGGAATTTCGTGACTACAAGGACACCAACTCAAGTTGCAAGTCATGCTCAGAAGTATTTCATACGGCAAGTTTCAGGAGGGAAGGATAAAAGGAGATCAAGTATCCATGACATCACAGTGGTGAATCTCCAAGAAACAAAATCTCCTTCATCAGAACCTTCTCTGGACAATTCGGTTCAGCCTGCGAATCAACCACAGAACCCTATCTCGTTTGACATGGTTAAGCAGGAATATGACTGGAAATCACAAGATGAGATTACGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCATTGTGTGGGATTTCTTCACACGAATCGAAATCACCAAGGCGTAGTAATGTACTTCGAGGCACACACCATGGTTACCAGTTTTCTCCGTTTGAAACTATTTTGCAAATGCAATCTATGCAGCATCAATGA 915 0.4219 MNREIEILSPASYIENSNWLFQENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWANDEGYDEFKQFCSVGGKRSGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSEPSLDNSVQPANQPQNPISFDMVKQEYDWKSQDEITPFVFNSTKGNMFVAPLCGISSHESKSPRRSNVLRGTHHGYQFSPFETILQMQSMQHQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01221 304 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vifa5g01221 304 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vifa5g01221 304 Pfam Myb-like DNA-binding domain 27 73 IPR001005 -
Vifa5g01221 304 Gene3D - 21 88 - -
Vifa5g01221 304 MobiDBLite consensus disorder prediction 117 136 - -
Vifa5g01221 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 243 IPR043363 -
Vifa5g01221 304 CDD SANT 135 180 IPR001005 -
Vifa5g01221 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vifa5g01221 304 CDD SANT 28 74 IPR001005 -
Vifa5g01221 304 SMART sant 25 77 IPR001005 -
Vifa5g01221 304 SMART sant 132 182 IPR001005 -
Vifa5g01221 304 MobiDBLite consensus disorder prediction 205 227 - -
Vifa5g01221 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vifa5g01221 304 Gene3D - 134 184 - -
Vifa5g01221 304 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vifa5g01221 304 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Vifa5g01221 304 FunFam transcription factor MYB1R1 134 185 - -
Vifa5g01221 304 FunFam Transcription factor SRM1 21 88 - -
Vifa5g01221 304 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Vifa5g01221 304 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01221 Vifa-Chr5 354508654 354510075 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g01221 Myb_DNA-binding 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01221 - - var:108329798 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01221 5 354508654 354510075 Vifa5g01221 5 354508654 354510075 ECH
Vifa5g01221 5 354508654 354510075 Vifa1g02069 1 329054613 329055992 ECH