Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01214 ATGAACATCAACACTTCATGTCTAATCTCCAAGAAAATAGCATTCAAATTCATCTATGGTTTTCTTCTATACATTACCAAATATCATCACACTTCAACTGCATCATCAACCTTGCAAGGAAATGAAACTGATTTACTAGCTTTACTTGACTTCAAGACTAGAATAACTCAAGATCCATTTCACACACTGAGTTCATGGAACCATTCCATCCACCACTGCAACTGGTTTGGAGTCACTTGTAACATCTCCAATGGAAGAGTCATCCATATGATCCTTCCAGACATGTTACTAGCAGGAACTCTTTCACCATCCATAGGAAATCTTACATACCTCACAAAACTCAACCTTAGAAACAGTAGCTTCCATGGAAACTTTCCTCAACAAGTTGGAAACTTACTATATCTTCAACATATAAATATCAGTTACAATTCTTTTGGTGGCACCATTCCAAGTAATCTAAGTAACTGCATGGAATTAAGTATATTGAGTTCTGGTCATAACAATTTCACAGGAAAAATTCCAACATGGATAGGAAATTTTTCTTCTTTATCTTTACTCAATCTTGCTGTGAACAATTTCCATGGAACCATACCGAACGAGGTAGGAAAGTTATCGAGCCTAACACTTTTCGCGATAAACGGAAATAACTTGTATGGTAAGATTCCTGCTTCAATTTTCAATATTTCCTCCTTGTACTTTCTCACCTTCACTGAGAACAATCTGCATGGTAATTTACCTTTTGATGTTGGTTTTACTCTTCCTAATCTTGAAACGTTTGCTGGTGGAGTCAACCATTTCACTGGAACAATACCTGAATCACTTTCAAATGCTTCAAGATTGGAAATTCTTGATTTTGCTGAAAATGGTTTCATTGGAACACTTCCTAAGAACATAGGAAGGTTGAAACTGTTGACAAGACTCAACTTTGATACCAATAGGCTTGGAAATGGGAAAGATGCTGATCTAGATTTTATTACTTCATTGATTAATTGTACTGTTCTTGAAGTTTTAGGCCTTGCTGAAAATAATTTTGGAGGAGAATTACCGAAGTCGATAGCTAATCTTTCAATACAGTTGAATGAGCTTGCATTAGGTACAAATGCTATATATGGAAGTGTCCCTATTGGAATAAGTAACCTTGTTAACTTGACAACTTTGGGATTGGAAAACAATTTCCTAAGTGGTTTTGTTCCTTACACAATAGGCATGCTTCAAAATTTGGTTGATTTAGAATTGTATAACAACAGTTTTTCTGGTTTGATCCCTTCCTCTATAGGAAACTTGAATAGATTAACAGTGCTACTAATAGGGGATAACAATTTTGAGGGAAGTATACCAGAAAGTATTGGAAATTGTCGAAACTTGTTGCGGCTAAATTTGAGCCATAACAAGCTCAATGGTAATCTGGTTAATCTAGAAGAGTTGGATCTGTCGAACAACAAATTGTCGGGCGTGATTCCGTCCACGCTTGGAAGCTGTGCTAGTTTGGAAGGGTTGCATATGCAGGGTAACTTTTTTGAAGCAATCTTTATGAGGAAAAGATCAGGAAAGAAAACTTCAAGAGAAAGAGTTACTGCAAAGGAATTGGAAGTGAATATTTCCTACTCGGAAATTGTAAAGTGGACGGGTGGATTCTCCGAGGATAACTTGATTGGCACGGGAAGTTTTGGTTCTGTATACAAAGCAACTCTTTTAAGCGAGGAAACAATCATTGCAATAAAAGTGTTGAATCTTGAACAGATAGGAGCTTCGAAAAGCTTCATTGATGAATGCAATGTTCTGAAAATTATAAGGCACCGCAACCTACTCAAGATCATAACCGCTATCTCAGGTATTGATCATAAAGGTAATGACTTCAAAGCACTTGTGTACGAATTCATGTCAAATGGATGTCTAGAAGATTGGTTGCATCCTAAGAATCAGACGAGAACACTGTCTTTTGTGAAAAGACTAAACATAGCAATTGATGTTGCTTGTGCACTTGAATATCTTCACCATTCTTGCCAAACTCCTATTGTTCATTGTGACATAAAGCCAAGCAATGTACTTCTTGACAAAAATATGGTAGCCCATGTTGGTGATTTCGGGCTCTATCGGATACATCGCTCCAGAGTATGGAATGGGTGGACGCGCGTCTGCGGTTGGAGATGTTTACAGTTATGGGATACTAATGCTAGAGATTTTCACAGGAAAAGGCCAACAGATGAAATGTTTGAAGGCGGCATCGGAATTCAACAATTTACAGCCTTGGCTTTACCGAATCATGCTATAGATATAATTGATCCTTCATTATTGCTACAGGATGAAGAACTCGATCGATATAACGAAGATTACAGTGATGAGATAGCATTAAGATATGAGAATGAACCTGGAGAGTTGGCTAGTATGGAGAATTATTTGGTTTCTGTGTTGCAGATTGGAGTGTCATGCTCTTCAATTTCACCAAGTGAAAGAATACATATGAATGAGGTTGTCAACAAATTGCAAGCAATCAAGAACTCATATTTAAGACTTAATGAGTTAAATTAG 2529 0.3701 MNINTSCLISKKIAFKFIYGFLLYITKYHHTSTASSTLQGNETDLLALLDFKTRITQDPFHTLSSWNHSIHHCNWFGVTCNISNGRVIHMILPDMLLAGTLSPSIGNLTYLTKLNLRNSSFHGNFPQQVGNLLYLQHINISYNSFGGTIPSNLSNCMELSILSSGHNNFTGKIPTWIGNFSSLSLLNLAVNNFHGTIPNEVGKLSSLTLFAINGNNLYGKIPASIFNISSLYFLTFTENNLHGNLPFDVGFTLPNLETFAGGVNHFTGTIPESLSNASRLEILDFAENGFIGTLPKNIGRLKLLTRLNFDTNRLGNGKDADLDFITSLINCTVLEVLGLAENNFGGELPKSIANLSIQLNELALGTNAIYGSVPIGISNLVNLTTLGLENNFLSGFVPYTIGMLQNLVDLELYNNSFSGLIPSSIGNLNRLTVLLIGDNNFEGSIPESIGNCRNLLRLNLSHNKLNGNLVNLEELDLSNNKLSGVIPSTLGSCASLEGLHMQGNFFEAIFMRKRSGKKTSRERVTAKELEVNISYSEIVKWTGGFSEDNLIGTGSFGSVYKATLLSEETIIAIKVLNLEQIGASKSFIDECNVLKIIRHRNLLKIITAISGIDHKGNDFKALVYEFMSNGCLEDWLHPKNQTRTLSFVKRLNIAIDVACALEYLHHSCQTPIVHCDIKPSNVLLDKNMVAHVGDFGLYRIHRSRVWNGWTRVCGWRCLQLWDTNARDFHRKRPTDEMFEGGIGIQQFTALALPNHAIDIIDPSLLLQDEELDRYNEDYSDEIALRYENEPGELASMENYLVSVLQIGVSCSSISPSERIHMNEVVNKLQAIKNSYLRLNELN 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01214 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Vifa5g01214 842 ProSiteProfiles Protein kinase domain profile. 545 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01214 842 Gene3D Ribonuclease Inhibitor 44 156 IPR032675 -
Vifa5g01214 842 SUPERFAMILY Protein kinase-like (PK-like) 528 828 IPR011009 -
Vifa5g01214 842 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 325 - -
Vifa5g01214 842 Gene3D Ribonuclease Inhibitor 251 324 IPR032675 -
Vifa5g01214 842 PRINTS Leucine-rich repeat signature 469 482 - -
Vifa5g01214 842 PRINTS Leucine-rich repeat signature 455 468 - -
Vifa5g01214 842 SMART LRR_typ_2 469 492 IPR003591 -
Vifa5g01214 842 SMART LRR_typ_2 380 403 IPR003591 -
Vifa5g01214 842 SMART LRR_typ_2 404 427 IPR003591 -
Vifa5g01214 842 SMART LRR_typ_2 428 452 IPR003591 -
Vifa5g01214 842 Gene3D Ribonuclease Inhibitor 157 250 IPR032675 -
Vifa5g01214 842 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 326 510 - -
Vifa5g01214 842 SUPERFAMILY L domain-like 67 288 - -
Vifa5g01214 842 ProSitePatterns Protein kinases ATP-binding region signature. 551 574 IPR017441 GO:0005524
Vifa5g01214 842 PANTHER OS04G0122200 PROTEIN 99 219 - -
Vifa5g01214 842 SMART serkin_6 545 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01214 842 Pfam Leucine Rich Repeat 471 493 IPR001611 GO:0005515
Vifa5g01214 842 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515
Vifa5g01214 842 SUPERFAMILY RNI-like 213 507 - -
Vifa5g01214 842 Gene3D Phosphorylase Kinase; domain 1 549 630 - -
Vifa5g01214 842 FunFam LRR receptor-like serine/threonine-protein kinase EFR 516 626 - -
Vifa5g01214 842 Pfam Protein kinase domain 546 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01214 842 Gene3D Ribonuclease Inhibitor 325 548 IPR032675 -
Vifa5g01214 842 Gene3D Transferase(Phosphotransferase) domain 1 631 718 - -
Vifa5g01214 842 Gene3D Transferase(Phosphotransferase) domain 1 727 839 - -
Vifa5g01214 842 ProSiteProfiles Leucine-rich repeat profile. 454 476 IPR001611 GO:0005515
Vifa5g01214 842 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01214 Vifa-Chr5 351168678 351171812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01214 41 837 Receptor kinase-like Gene Family AT3G47570 35.119 6.09e-168 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa5g01214 Pkinase 5.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01214 - - oeu:111380265 707.597