Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01211 ATGAAAAGTGTGTTTGGAGGGTTTGATGGTGGCATAGTCATGATTTGCAGTTGCTTTGGTGGTTTGAATTGGTGTAAAGGGAAGGGTGAACCTGCTGAGCAGATGCTTGAACAAGTGGGGGAAACTAAAAGCTTTAGCTATAGCTCATTGAGATCTGCTACGGGTGATTTTCATTCGTCTTGCAAAATTGGTGGAGGAGGCTATGGAGTTGTCTACAAGGGTGTTTTAAGGGACGGCGCTCAAGTTGCTATCAAGTCTCTCTCTGTAGAATCTAAACAAGGAACTCATGAATTTATGACAGAAATTGAGATGATATCAAATATACAACATCCAAATCTTGTTAAACTAATCGGCTTCTGTATTGAGGATAATCATCGAATATTGGTGTACGAGTTTCTCGAGAACAATAGCCTCGCTAGTGCTTTGTTAGGTTCAAAAAGTAAATGTGTTCCGGCGGATTGGCGAAAAAGGGCTGCTATTTGCTGTGGTACAGCTTCTGGTCTAACCTTTCTTCACGAAGAAGCTCAGCCAAACATTGTTCATAGAGATATCAAAGCAAGCAACATATTGCTGGACGAGAACTTCAATCCGAAAATCGGTGATTTTGGTCTTGCAAAGCTTTTTCCTGACAATGTCACTCATGTTAGTACCCGAGTTGCAGGAACAATGGGATATCTCGCACCGGAATACGCACTTCTAAGACAGCTTACAAAGAAGGCTGATGTATATAGTTTTGGGATTCTGATGCTTGAAATAATCAGCGGTAAAAGTAGTAGCAAAGCTGCATTTGGCGACAATATTTTGGTTCTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAACCGGCTTCTGGAACTTGTTGATTCCGAACTAACCGACTATGACGAGAACGAGGTGTATAGGTTCCTTGTGGTTGCTCTCTTTTGCACCCAATCATCAGCTAAACATAGACCAACCATGAAACAAGTACTACAAATGCTGTCCAAACAAGTTCATCTTAACGAGAAGGCATTAACTGAACCTGGAATATACAGATGGGATACGTCGGGAAAGATGAGCAGTTACTTGAACGAGACGTCGTCGTCGTCTCAAGTAATCAAGTACAAAAGATCTGAAAATCAACATCAAACCTCGACGCAATTTAGCGGTACAGATATTGCGACAGAGATGTTTCCTAGATGA 1182 0.4171 MKSVFGGFDGGIVMICSCFGGLNWCKGKGEPAEQMLEQVGETKSFSYSSLRSATGDFHSSCKIGGGGYGVVYKGVLRDGAQVAIKSLSVESKQGTHEFMTEIEMISNIQHPNLVKLIGFCIEDNHRILVYEFLENNSLASALLGSKSKCVPADWRKRAAICCGTASGLTFLHEEAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDSELTDYDENEVYRFLVVALFCTQSSAKHRPTMKQVLQMLSKQVHLNEKALTEPGIYRWDTSGKMSSYLNETSSSSQVIKYKRSENQHQTSTQFSGTDIATEMFPR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01211 393 CDD STKc_IRAK 76 329 - -
Vifa5g01211 393 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vifa5g01211 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa5g01211 393 SMART serkin_6 57 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01211 393 SUPERFAMILY Protein kinase-like (PK-like) 36 327 IPR011009 -
Vifa5g01211 393 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 41 368 - -
Vifa5g01211 393 FunFam Putative LRR receptor-like serine/threonine-protein kinase 133 339 - -
Vifa5g01211 393 Gene3D Transferase(Phosphotransferase) domain 1 133 341 - -
Vifa5g01211 393 MobiDBLite consensus disorder prediction 372 393 - -
Vifa5g01211 393 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 32 132 - -
Vifa5g01211 393 ProSiteProfiles Protein kinase domain profile. 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01211 393 Coils Coil 277 297 - -
Vifa5g01211 393 MobiDBLite consensus disorder prediction 372 386 - -
Vifa5g01211 393 Gene3D Phosphorylase Kinase; domain 1 25 132 - -
Vifa5g01211 393 Pfam Protein kinase domain 58 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01211 Vifa-Chr5 350624500 350627372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01211 33 363 Receptor kinase-like Gene Family AT1G56120 50.755 1.98e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa5g01211 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01211 - - gmx:100816683 589.341