Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01207 ATGACAAAGGGCAAGGGAACTGGAAAGACTTCGAGGGAAGTACTGAAACCAGTTGATGACCGAAAAGTAGGAAAGCGAAAGGCTGTTTCTAAACCCGAAAAGAGTGCACCGAAGCCTAAGAAGGAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGGCCTCCCAGCGCTTTCTTTGTCTTCCTTGAGGATTTCAGAAAGACTTTCAAGGCAGAAAACCCTAATGTGAAGGCTGTATCAGCTGTTGGAAAGGCTGGAGGAGAGAAATGGAAATCCTTGACTAAGGCTGAAAAAGCACCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAATATGAAAAACTGCTGAACGCTTATAATAACAAAGCGGCAAGTTCAGTCGAGGATGACGAGGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAACGAAGATGAAGCAAGTGGAGAGGACGACCACCAAGATGACGATGATGAAGACGAGGAAGATGAAGATGATGAAGAAGACGATGATTGA 516 0.4399 MTKGKGTGKTSREVLKPVDDRKVGKRKAVSKPEKSAPKPKKEKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLLNAYNNKAASSVEDDEEESDKSKSEVNNEDEASGEDDHQDDDDEDEEDEDDEEDDD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01207 171 SMART hmgende2 50 121 IPR009071 -
Vifa5g01207 171 SUPERFAMILY HMG-box 36 120 IPR036910 -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 121 171 - -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 90 107 - -
Vifa5g01207 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 157 IPR031061 -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 125 144 - -
Vifa5g01207 171 Gene3D High mobility group box domain 34 147 IPR036910 -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 83 107 - -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 9 52 - -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 145 171 - -
Vifa5g01207 171 MobiDBLite consensus disorder prediction 1 56 - -
Vifa5g01207 171 CDD HMG-box_AtHMGB1-like 52 112 - -
Vifa5g01207 171 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Vifa5g01207 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01207 Vifa-Chr5 348839772 348841032 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa5g01207 HMG_box 9.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01207 K25507 - gmx:100499704 193.741