Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01206 ATGCCAAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCCAGATGGTGCTTGCCTTCAAATGAGATTGTCCTATAGCCCAGCTGCCCATTTCTTCCTCTTTTTTGTTCAGTGGACTGACTGTTACCTCGCCGGAGCCTTAGGGTTGCTTAAAATTCTTATCTACAAGGCATATAAAGATGGGAAGACAACCATGTCTATTTATGAAAGAAATGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCGTCTTTATTGCAACTTCATCGAGGAATCACTGATGTTGATGATAGGAAACAAAAGCATTTGTGCGCTACTAAGTACAAGCGTAAAGAATTAATAAACAACGGAAAGAGCACTGAAATTGACACGGAAGAAGATGAAGAAGAGTGTGATATTTGCATGGAGATGAACACTATGGTTGTATTGCCCAGTTGCAATCATTCAATGTGTATGAAATGCTATCGAGACTGGCATGGAAGATCGGAATCTTGCCCGTTCTGTCGGGACAGTCTTAAACGCGTAAACTCTGGTGATCTTTGGGTGTACATAAGCACCAATGAGATAGATGATCTAGCTACAATCAACAAGGAGAATTTGAAAAGACTATTTATGTATATAGAAAAGTTGCCTCTTGTTGCTAGACCCTATATTCATCTCATTTCATCACAGATTATGGTTGCCTCATAG 738 0.3997 MPKSFKDSLKALEADIHFANTLASDYPSDPDGACLQMRLSYSPAAHFFLFFVQWTDCYLAGALGLLKILIYKAYKDGKTTMSIYERNASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKRKELINNGKSTEIDTEEDEEECDICMEMNTMVVLPSCNHSMCMKCYRDWHGRSESCPFCRDSLKRVNSGDLWVYISTNEIDDLATINKENLKRLFMYIEKLPLVARPYIHLISSQIMVAS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01206 245 PANTHER RING FINGER PROTEIN 41, 151 2 229 - -
Vifa5g01206 245 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Vifa5g01206 245 SUPERFAMILY RING/U-box 141 190 - -
Vifa5g01206 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 194 IPR013083 -
Vifa5g01206 245 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Vifa5g01206 245 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Vifa5g01206 245 SMART ring_2 147 184 IPR001841 -
Vifa5g01206 245 FunFam RING/U-box superfamily protein 124 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01206 Vifa-Chr5 348838181 348839388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01206 94 189 C3H Transcription Factor Family AT5G01960 32.000 3.65e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01206 K25840 - gmx:100814293 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01206 5 348838181 348839388 Vifa5g01206 5 348838181 348839388 ECH