Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g01206 | ATGCCAAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCCAGATGGTGCTTGCCTTCAAATGAGATTGTCCTATAGCCCAGCTGCCCATTTCTTCCTCTTTTTTGTTCAGTGGACTGACTGTTACCTCGCCGGAGCCTTAGGGTTGCTTAAAATTCTTATCTACAAGGCATATAAAGATGGGAAGACAACCATGTCTATTTATGAAAGAAATGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCGTCTTTATTGCAACTTCATCGAGGAATCACTGATGTTGATGATAGGAAACAAAAGCATTTGTGCGCTACTAAGTACAAGCGTAAAGAATTAATAAACAACGGAAAGAGCACTGAAATTGACACGGAAGAAGATGAAGAAGAGTGTGATATTTGCATGGAGATGAACACTATGGTTGTATTGCCCAGTTGCAATCATTCAATGTGTATGAAATGCTATCGAGACTGGCATGGAAGATCGGAATCTTGCCCGTTCTGTCGGGACAGTCTTAAACGCGTAAACTCTGGTGATCTTTGGGTGTACATAAGCACCAATGAGATAGATGATCTAGCTACAATCAACAAGGAGAATTTGAAAAGACTATTTATGTATATAGAAAAGTTGCCTCTTGTTGCTAGACCCTATATTCATCTCATTTCATCACAGATTATGGTTGCCTCATAG | 738 | 0.3997 | MPKSFKDSLKALEADIHFANTLASDYPSDPDGACLQMRLSYSPAAHFFLFFVQWTDCYLAGALGLLKILIYKAYKDGKTTMSIYERNASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKRKELINNGKSTEIDTEEDEEECDICMEMNTMVVLPSCNHSMCMKCYRDWHGRSESCPFCRDSLKRVNSGDLWVYISTNEIDDLATINKENLKRLFMYIEKLPLVARPYIHLISSQIMVAS | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g01206 | 245 | PANTHER | RING FINGER PROTEIN 41, 151 | 2 | 229 | - | - | |
Vifa5g01206 | 245 | Pfam | Zinc finger, C3HC4 type (RING finger) | 144 | 190 | - | - | |
Vifa5g01206 | 245 | SUPERFAMILY | RING/U-box | 141 | 190 | - | - | |
Vifa5g01206 | 245 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 194 | IPR013083 | - | |
Vifa5g01206 | 245 | ProSitePatterns | Zinc finger RING-type signature. | 162 | 171 | IPR017907 | - | |
Vifa5g01206 | 245 | ProSiteProfiles | Zinc finger RING-type profile. | 147 | 185 | IPR001841 | - | |
Vifa5g01206 | 245 | SMART | ring_2 | 147 | 184 | IPR001841 | - | |
Vifa5g01206 | 245 | FunFam | RING/U-box superfamily protein | 124 | 194 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g01206 | Vifa-Chr5 | 348838181 | 348839388 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g01206 | 94 | 189 | C3H Transcription Factor Family | AT5G01960 | 32.000 | 3.65e-08 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g01206 | K25840 | - | gmx:100814293 | 376.326 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g01206 | 5 | 348838181 | 348839388 | Vifa5g01206 | 5 | 348838181 | 348839388 | ECH |