Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01202 ATGGCACCTACAGCTACAAAAACTGCAAATGGATCAAACCACCCAAATGAAACGAAAGGAAAAATCATTACTTGCAAAGCTGCTGTGGCATATGGTCCAGGAGAACCCTTAGTAGTAGAAGAAATTATTGTGCATCCTCCTCGAAAAATGGAGGTTCGAATCAAAATCCTGTATACTTCCATTTGTCACACCGATCTCAGCGGTTGGCAAGGCGAGTCCGAACCTCAACGTGCTTTCCCTCGAATTTTCGGGCATGAAGCCTCCGGGATTGTGGAGAGTGTAGGGGAAGGAGTGAGTGACATGAAAGAAAGGGACTATGTGGTGGTAATATTCAACGGAGAATGTGGTGAGTGTGTGTACTGCACGTGTGAGAAAACCAACATGTGTGAGAAATTTGGGGTGAATCCAATGAAGAAGGAAATGTGTGATGGAACAAGTAGGTTTAGTACAAAAGATGGTAAAGCTATTTTCCACTTTATGAACACTTCAACTTTCACGGAGTATACTGTCGTCGATTCAGCTTGTGTTGTTAAGATCAATCCTCAGTATACATCAAGTCTCAAGAATCTCACCTTGCTTAGTTGTGGAGTTTCAACAGAGAGAATCTAA 609 0.4253 MAPTATKTANGSNHPNETKGKIITCKAAVAYGPGEPLVVEEIIVHPPRKMEVRIKILYTSICHTDLSGWQGESEPQRAFPRIFGHEASGIVESVGEGVSDMKERDYVVVIFNGECGECVYCTCEKTNMCEKFGVNPMKKEMCDGTSRFSTKDGKAIFHFMNTSTFTEYTVVDSACVVKINPQYTSSLKNLTLLSCGVSTERI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01202 202 FunFam alcohol dehydrogenase 1-like isoform X1 33 199 - -
Vifa5g01202 202 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 84 98 IPR002328 GO:0008270|GO:0016491
Vifa5g01202 202 Gene3D - 17 201 - -
Vifa5g01202 202 SUPERFAMILY GroES-like 18 184 IPR011032 -
Vifa5g01202 202 PANTHER ALCOHOL DEHYDROGENASE 20 199 - -
Vifa5g01202 202 Pfam Alcohol dehydrogenase GroES-like domain 51 178 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01202 Vifa-Chr5 348781707 348786116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01202 51 199 Monolignol Biosynthesis Gene Families AT2G21730 32.000 2.22e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01202 K00001 - gmx:100787307 307.375