Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01201 ATGGCTTCAGGGCAAACACAAGAAGAACGATCATGGCTTTTAGAGAACGGTAATCCAAAGATCTTGACCAAGGAATCAAGACACGGACATGGCCGTAGCCGAAGAGCGCACAACATTTCTTCAGCTTCAATGCGAAAGAAATCCAAATTTACTCTCGTCTCCAATATTCCATGGGATTCCCTTAGGATTGTGTTGGCTAACATCCAAGAGGTTATTCTTGGTACAAAGCTTTCCATCCTCTTCATTGCCGTTCCTGCTGCAATCCTAGCTCATGACCTTGCCTTAGGAAGATCATGGGTTTTTATATTGAGCTTACTTGGCCTTACTCCACTTGCTGAACGTGTGAGTTTTCTTACAGAACAAATTGCTTTCTTCACCGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATGCTACTGAACTCATAATTGCAATATTTGCTCTTAGCAGCAACAAAATTGCTGTTGTCAAGTATTCTCTTTTGGGTTCCATTCTTTCAAATCTTCTTCTTGTTCTTGGAACTTCTCTTCTTTGTGGTGGCATTGCAAATCTTAGGGTGGAGCAGAAATATGACAGAAGGCAAGCAGATGTGAACTCACTGATGCTGATACTGGCATTGCTATGCCTTTTGCTTCCAATGCTATTCACATATAGTGCTGCATCACCGGAACTCACCGTAGAATCTTCACTCTACTTGTCAAGAGCTGCTAGCATTGTCATGTTGGCTGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAACTATTTGAAGCTGAAGATGTAGGCGGAGATGAGAACATTGAGGCAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTGTTCACTGCGTTGTTGTCTGAATACGTGGTCGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCAGTGAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTTGACATTTCCTTAGGTGTTGCATTGGGCTCTGCTACTCAAATTGCCATGTTTGTGGTTCCCCTCTGTGTTACTGTTGCTTGGGGAATGGGAGTGAATATGGACCTAAACTTCAACCTCATTGAGACAGGTTCTCTTGCTGTGGCAATTATAGTCACAAGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGATTTCCCAGTGACCTAA 1254 0.4266 MASGQTQEERSWLLENGNPKILTKESRHGHGRSRRAHNISSASMRKKSKFTLVSNIPWDSLRIVLANIQEVILGTKLSILFIAVPAAILAHDLALGRSWVFILSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRVEQKYDRRQADVNSLMLILALLCLLLPMLFTYSAASPELTVESSLYLSRAASIVMLAAYFVYLIFQLWTHRQLFEAEDVGGDENIEAEEAVIGFWSGFAWLAGMTVFTALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVTVAWGMGVNMDLNFNLIETGSLAVAIIVTSFTLQDGTSHYMKDFPVT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01201 417 Gene3D - 128 277 IPR044880 -
Vifa5g01201 417 Gene3D - 278 414 IPR044880 -
Vifa5g01201 417 FunFam Vacuolar cation/proton exchanger 273 416 - -
Vifa5g01201 417 NCBIfam calcium/proton exchanger 80 411 IPR004798 GO:0006816|GO:0015369
Vifa5g01201 417 NCBIfam calcium/proton exchanger 64 412 - -
Vifa5g01201 417 FunFam Vacuolar cation/proton exchanger 128 272 - -
Vifa5g01201 417 Pfam Sodium/calcium exchanger protein 285 403 IPR004837 GO:0016020|GO:0055085
Vifa5g01201 417 Pfam Sodium/calcium exchanger protein 99 256 IPR004837 GO:0016020|GO:0055085
Vifa5g01201 417 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 412 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01201 Vifa-Chr5 348614706 348618618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01201 15 412 Antiporters AT2G38170 67.494 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01201 K07300 - gmx:100816231 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01201 5 348614706 348618618 Vifa5g01201 5 348614706 348618618 ECH