Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01200 ATGGCTTCTCGCCAAATACAACAAGAGCAACAACCATGGCTTTTGGAGAATGGTCATCCAAAGGTCTTAACCAAGGAGTCTAGACATGGACATGGCCGAAGCCGAACCGCGCATAACATGTCGTCTTCTTCGTTGCGCAAGAAATCCGACCGGACACTCGTGTCCAAGATTCGATGCGCTTCGGTTAGGAATGTCGTGGCTAATCTCCAAGAGGTTATTCTTGGTACAAAGCTTTCCATTCTCTTTCCTGCCATTCCTGCGGCCATTATAGCTCATTACCTTGGCTTAGGAAGATCATGGGTTTTCATATTGAGCTTACTTGGTCTCACTCCACTGGCTGAACGTGTGAGCTTTCTCACAGAACAAATTGCCATCTTCACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATGTTACTGAGCTTATCATTGCAATATTTGCTCTTACATCCAACAAAATTGGTGTTGTCAAGTATTCACTATTAGGTTCCGTCCTTTCGAATCTTCTTCTTGTTCTCGGAACTTCTCTACTTTGCGGTGGCATTGCAAATATTGGAGTTGAGCAGAAATACGACCGAAGACAAGCGGATGTGAACTCGCTGATGTTGCTATTGGCGTTGTTATGCCATTTGCTTCCGTTGCTATTCACATACAGTGCTGCATCGGCTGAACTCACAGTAGAGCCTTCGCTCTATTTGTCCAGAGCTGCTAGCATTGTTATGTTGCTTGCGTATTTTGCTTATTTGATCTTTCAACTATGGACACATAGGCAATTATTTGAAGCTGAAGATGAAGGTGAAAGTGAGAATAATGAAGCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTCGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCAGTGAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGCAATGCAGCTGAACATGCTGGAGCAATCATTTTTGCTTTCAAGAACAAGCTTGACATTTCCTTAGGTGTTGCATTGGGCTCTTCTACTCAAATTGCCATGTTTGTGGTTCCCCTCTGTGTTACTGTTTCTTGGGCAATGGGAGTGAATATGGACCTAAACTTCAACCTCCTCGAGACAGGTTCTCTTGCTGTGGCAATCATAGTCACATCGTTCACTTTACAGGATGGTACTTCTCATTACATGAAAGGCCTTGTTCTCCTACTTTGCTACTTTGTTATTGCTGCTTGCTTCTTCGTACAAAGAATTCCCAATGACCCAAATGATGTTCATAACATCACTCTTAAATATGTCAGTGATTCAATTTTAAGCGCTTAA 1371 0.4289 MASRQIQQEQQPWLLENGHPKVLTKESRHGHGRSRTAHNMSSSSLRKKSDRTLVSKIRCASVRNVVANLQEVILGTKLSILFPAIPAAIIAHYLGLGRSWVFILSLLGLTPLAERVSFLTEQIAIFTGPTVGGLLNATCGNVTELIIAIFALTSNKIGVVKYSLLGSVLSNLLLVLGTSLLCGGIANIGVEQKYDRRQADVNSLMLLLALLCHLLPLLFTYSAASAELTVEPSLYLSRAASIVMLLAYFAYLIFQLWTHRQLFEAEDEGESENNEAEEEAVIGFWSGFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSSTQIAMFVVPLCVTVSWAMGVNMDLNFNLLETGSLAVAIIVTSFTLQDGTSHYMKGLVLLLCYFVIAACFFVQRIPNDPNDVHNITLKYVSDSILSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01200 456 NCBIfam calcium/proton exchanger 64 430 - -
Vifa5g01200 456 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016020|GO:0055085
Vifa5g01200 456 Pfam Sodium/calcium exchanger protein 287 428 IPR004837 GO:0016020|GO:0055085
Vifa5g01200 456 NCBIfam calcium/proton exchanger 84 430 IPR004798 GO:0006816|GO:0015369
Vifa5g01200 456 MobiDBLite consensus disorder prediction 17 49 - -
Vifa5g01200 456 FunFam Vacuolar cation/proton exchanger 275 431 - -
Vifa5g01200 456 Gene3D - 129 279 IPR044880 -
Vifa5g01200 456 Gene3D - 280 431 IPR044880 -
Vifa5g01200 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 433 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa5g01200 456 Coils Coil 259 279 - -
Vifa5g01200 456 FunFam Vacuolar cation/proton exchanger 129 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01200 Vifa-Chr5 348591106 348594207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01200 11 456 Antiporters AT2G38170 66.741 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01200 K07300 - gmx:100779440 664.455