Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01193 ATGCCAGAGCCACATTCCGCCTCCGCCACTCCTTCCGCAGGCAACATTGAAGACGAAAATGCTGAAGCTTCGGATAACCCCCCACGCGAGAGCCGGCGCGTGAGCATCACCTACGGGAGCACCAATTTGAGAATGGCCGATGACTCCGCTCTTGTTAGAGATGAGAAGTGGTCCTGCTTGGCCGTTATCTTCAGCTTTTGGTTCTTCGTTGCGGTCACGATGATAATGGGGGTGTACGGCTCAATGACCATGGTTCTAGGTCCGTGTTCTTCGATTGTTTTGCAACCTAACCCTGTGTTTGTGGAATATGTGAAGGTAGAAAACTTAGAGCCGAATCCAGGGCTCGTTCTTTATGGTACTTATCAATATCCACCTCTTGATGTTGTTTCCTTTTGGAGGGAAACTCGTAATATATCTATTCCTTATGGCGCAGATAAGGAATGGAAATATTATTTGAATAAAGGGTCTGAAGTAAATATTTCGTATAGCTTGAGCTCTGAAAATTCCTCTATTTATCTTGTAATTGCAGAAGGAGCTGAAAGTCTCTCATTGTGGCTGGAGGACCCAACATATCCCAATACAACTCTGTCTTGGAACGTGATCCATGGAACTGGTATGATTACACAAGAAATATTCACGTCATCGTACTATTATGTGGCCTTGGGTAATTTAGAAGATGAAGTGGAGGTTGAATTAAACCTCACTGTAAGGGCCTTTATGCATAATACAACAAGTGCTTTCTACAAATGCGCCCCGACTAGTAGCCCGTGCAGTTTAAATATTTTCTTTCCAGATGGAAACGCAGCTGTCTTAGTCTCTCCTGCTCCACAGCAGAACACATCTAATGATGAGTGGTATGTCAAACTGACCTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGTACTCACTGTAATCATGTTTTGGGCCTTCAACTTCTTGAACAAACTTCAGCGTGCCAATGATGATAGAGATGATGAGGATCTTAACTTCCTCACCGGTGGTTCCGCTGATGGTGAGACCAGTAATAATACTCGGCGTCTTTGTGCGATTTGTTTTGATGCTCCACGGGATTGCTTCTTCCTTCCATGCGGGCACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGCTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTGTGA 1209 0.445 MPEPHSASATPSAGNIEDENAEASDNPPRESRRVSITYGSTNLRMADDSALVRDEKWSCLAVIFSFWFFVAVTMIMGVYGSMTMVLGPCSSIVLQPNPVFVEYVKVENLEPNPGLVLYGTYQYPPLDVVSFWRETRNISIPYGADKEWKYYLNKGSEVNISYSLSSENSSIYLVIAEGAESLSLWLEDPTYPNTTLSWNVIHGTGMITQEIFTSSYYYVALGNLEDEVEVELNLTVRAFMHNTTSAFYKCAPTSSPCSLNIFFPDGNAAVLVSPAPQQNTSNDEWYVKLTYGPRWLTYIFGIGVLTVIMFWAFNFLNKLQRANDDRDDEDLNFLTGGSADGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEAAGTCPVCRRNMKKVRKIFTV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01193 402 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g01193 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 402 IPR013083 -
Vifa5g01193 402 SMART ring_2 351 389 IPR001841 -
Vifa5g01193 402 Pfam Domain of unknown function (DUF4793) 206 311 IPR032010 -
Vifa5g01193 402 Pfam Zinc finger, C3HC4 type (RING finger) 348 396 - -
Vifa5g01193 402 PANTHER OS05G0521000 PROTEIN 46 323 - -
Vifa5g01193 402 SUPERFAMILY RING/U-box 350 396 - -
Vifa5g01193 402 FunFam E3 ubiquitin-protein ligase APD2 340 401 - -
Vifa5g01193 402 Pfam Domain of unknown function (DUF4792) 114 182 IPR032008 -
Vifa5g01193 402 ProSiteProfiles Zinc finger RING-type profile. 351 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01193 Vifa-Chr5 345711589 345714309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01193 335 399 C3H Transcription Factor Family AT3G06140 29.231 3.28e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01193 - - tpra:123891971 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01193 5 345711589 345714309 Vifa5g01193 5 345711589 345714309 ECH