Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01192 ATGGAAATGGCTTCTAGCCCTCGTTCCGTTGAAGAGATCTTCAAAGATTTCAACGCTCGTAGAACCGCTGTTCTTCGTGCTCTCACTCTTGATGTTGATGAATTTTACGGTCTTTGTGATCCAGATAAGGATAATTTGTGTCTCTATGGACATGGGAATGAAAGCTGGGAAGTGACTCTGCCAGCGGAGGAAGTTCCGCCTGAGCTACCTGAGCCGGCTCTTGGGATCAATTTTGCTAGAGATGGGATGAATAGGAGGGACTGGCTTTCGCTTGTTGCTGTACACAGTGATTCCTGGTTGCTTTCTGTTGCTTTTTACCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTAATCAACGAACTTCCCACTGTTTTTGAAGTTGTGACCGACAGGAAGCCGATCAAGGACAACAAGCCGGCAGCCGACAGTGGAAGCAAATCAAGAGGAAGCACCAAGAGATCAAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGCAGACGAGGGTTATGAGGAGGAGGAAGACGAGCACAGTGAAACACTTTGCGGGACCTGCGGCGGAAATTACAATGCGGACGAGTTTTGGATTGGCTGCGATATATGTGAGAGGTGGTACCACGGGAAGTGTGTGAAGATCACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCTTCATGCAGCTTGAGAAGGCCCAGACCCTAG 726 0.4807 MEMASSPRSVEEIFKDFNARRTAVLRALTLDVDEFYGLCDPDKDNLCLYGHGNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPADEGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSLRRPRP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01192 241 Pfam PHD-finger 188 235 IPR019787 -
Vifa5g01192 241 PANTHER CPG BINDING PROTEIN 6 240 IPR045104 GO:0006355|GO:0042393
Vifa5g01192 241 SMART PHD_3 187 235 IPR001965 -
Vifa5g01192 241 CDD PHD_AL_plant 187 237 IPR044104 -
Vifa5g01192 241 FunFam PHD finger alfin-like protein 180 236 - -
Vifa5g01192 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Vifa5g01192 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Vifa5g01192 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Vifa5g01192 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Vifa5g01192 241 MobiDBLite consensus disorder prediction 148 166 - -
Vifa5g01192 241 MobiDBLite consensus disorder prediction 140 179 - -
Vifa5g01192 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01192 Vifa-Chr5 345565247 345567500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01192 4 240 Alfin-like Transcription Factor Family AT5G05610 75.527 2.75e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa5g01192 Alfin 8.3e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01192 K26274 - gmx:100793126 438.728