Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01191 ATGGGTTCCACTCGCTCAGATGATGGCTCTGCCGCACACAAAGAACGCTTGCGCTGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGGCTTGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAGGTAATGAAGGCTATGGACATTTCAAATTTGAGCATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAGTTGATTCCAGAATCCACCTCAAGAGGAAAGATTGAGAAGAGAGGTGTATCACATATACTTCCAAATTTCTGTTCTATATCTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAAGCAGAGGTGCACAAATGCATGAATGACAGAGTTGAGGTTCAGAAAAGCTTGAAGCTGAAAATTGAAGCACAGGGAAAGTACCTAGATAGAATCGGACAGAGTAGTCAGATCAAAACAATTACAAGAAAAGCATGCAAGTCTTTTGTTGGTAGAGCTATACCCCTGCCCTCTCTTTCCGAGGAATCTGAATCCTTAAAAACACAATCCGAGGAAGAACATCAAACAGCCGAAAAGAAAAAGATCACTGGCGGAGTTTTTCCTGCAGATTTTGAACTAGGATCATCCACAATCTCAGAATTCTGCAACCAAACTTGGAATCTTTCCTGGAGTCAGCTGGCTGAAGCAACGTGCCAATCACCTTTGGTGACTAGTTTCTTATTATAG 717 0.4254 MGSTRSDDGSAAHKERLRWTQQLHDLFVEAVNRLGGPDRATPKGILKVMKAMDISNLSIYHVKSHLQKYRISKLIPESTSRGKIEKRGVSHILPNFCSISALQLKEVLQMQAEVHKCMNDRVEVQKSLKLKIEAQGKYLDRIGQSSQIKTITRKACKSFVGRAIPLPSLSEESESLKTQSEEEHQTAEKKKITGGVFPADFELGSSTISEFCNQTWNLSWSQLAEATCQSPLVTSFLL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01191 238 Pfam Myb-like DNA-binding domain 17 70 IPR001005 -
Vifa5g01191 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 187 IPR044848 GO:0003700
Vifa5g01191 238 MobiDBLite consensus disorder prediction 170 189 - -
Vifa5g01191 238 Coils Coil 170 190 - -
Vifa5g01191 238 Pfam MYB-CC type transfactor, LHEQLE motif 103 142 IPR025756 -
Vifa5g01191 238 SUPERFAMILY Homeodomain-like 13 71 IPR009057 -
Vifa5g01191 238 FunFam Two-component response regulator 10 74 - -
Vifa5g01191 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 14 72 IPR006447 GO:0003677
Vifa5g01191 238 Gene3D - 13 74 - -
Vifa5g01191 238 MobiDBLite consensus disorder prediction 175 189 - -
Vifa5g01191 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01191 Vifa-Chr5 345561761 345564573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01191 1 139 G2-like Transcription Factor Family AT4G28610 46.207 2.28e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g01191 Myb_DNA-binding 9.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01191 - - psat:127127459 415.231