Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01187 ATGGGTAACTGCTGCAGATCTCCGGCCGCCGTCGCTCGTGAAGATGTCAAATCAAGTTTCTCCAACCACGATCACGGCAAGCGCGTCGGAAACGACAACCACGCCGGAAACAAAAAACCTCCCCCGCCGGTCACCGTCCTCGGCGGCGCGGCGAAGGACAACATGGAGGAACGCTACTTAGTAGACCGTGAACTCGGCCGTGGCGAGTTCGGTGTAACCTACCTTTGCATCGACCGTGACACCAGAGAGCTTTTAGCCTGCAAGAGTATCTCCAAGAGGAAGCTGAGAACCGCTGTCGATGTTGATGATGTCCGACGTGAGGTTGCTATTATGCGCCATTTGCCGAAGAGTTCGAGTATTGTGACGCTTCGGGAGGCTTGTGAGGATGACAATGCTGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGGGAGCTTTTTGACCGGATTGTTGCGAGGGGTCATTATACAGAGCGTGCTGCTGCGGCGGTTGCGAGGACTATTGTGGAGGTTGTGCAGCTTTGCCATAAGCATGGAGTGATTCATCGCGACCTTAAGCCGGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCGCCTCTCAAAGCTATTGATTTTGGGCTCTCTATATTCTTCAAGCCAGGTGAAAAATTCTCAGAAATTGTAGGAAGTCCATATTATATGGCTCCAGAGGTGCTCAAGCGTAACTATGGACCTGAAATAGATATATGGAGTGCAGGAGTGATACTCTATATCTTATTGTGTGGTGTTCCCCCATTCTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCTATCCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTAGAACCTGACCCTAAGCTTCGATTAACGGCCAAACAAGTGCTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCAAATGTTCCTCTTGGAGATGTCGTCAAGTCAAGGCTTAAGCAATTCTCAATGATGAATCGATTCAAAAGAAAAGCCCTTAGGGTAATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGAGATGTTCAAGAAGATGGATACTGATAATGATGGTATTGTTTCTATTGAAGAACTAAAAGTTGGATTCCGAAACTCTGATTCTCAACTTGCTGAGTCTGAAATTCAGATGTTTATTGAAGCGGTAGATAATAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCCATTTCCCTTCATTTAAAAAGAATGGCTAATGACGAGCATCTTCACAAGGCCTTCTCCTATTTTGACAAGGATGGGAACGGATATATTGAACCAGAAGAGCTACGGAATGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACAGACAAGGATGGGAAAATCAGCTATGATGAATTTGTGGCTATGATGAAAACTGGAACGGATTGGAGAAAAGCTTCTCGGCATTACTCACGAGGGAGATTCAATAGCTTGAGCTTGAAGTTAATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG 1602 0.4482 MGNCCRSPAAVAREDVKSSFSNHDHGKRVGNDNHAGNKKPPPPVTVLGGAAKDNMEERYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVDDVRREVAIMRHLPKSSSIVTLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKEMFKKMDTDNDGIVSIEELKVGFRNSDSQLAESEIQMFIEAVDNNGKGTLDYGEFVAISLHLKRMANDEHLHKAFSYFDKDGNGYIEPEELRNALMEDGTDDCTDVANDIFQEVDTDKDGKISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01187 533 Pfam Protein kinase domain 61 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01187 533 SUPERFAMILY Protein kinase-like (PK-like) 57 324 IPR011009 -
Vifa5g01187 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa5g01187 533 MobiDBLite consensus disorder prediction 17 34 - -
Vifa5g01187 533 CDD STKc_CAMK 58 316 - -
Vifa5g01187 533 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Vifa5g01187 533 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Vifa5g01187 533 Pfam EF-hand domain pair 363 424 IPR002048 GO:0005509
Vifa5g01187 533 Gene3D Phosphorylase Kinase; domain 1 60 144 - -
Vifa5g01187 533 FunFam Calcium-dependent protein kinase 1 61 144 - -
Vifa5g01187 533 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01187 533 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vifa5g01187 533 SUPERFAMILY EF-hand 346 524 IPR011992 -
Vifa5g01187 533 MobiDBLite consensus disorder prediction 15 44 - -
Vifa5g01187 533 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Vifa5g01187 533 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vifa5g01187 533 FunFam calcium-dependent protein kinase 13 145 325 - -
Vifa5g01187 533 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Vifa5g01187 533 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Vifa5g01187 533 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Vifa5g01187 533 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Vifa5g01187 533 Gene3D - 326 501 - -
Vifa5g01187 533 SMART efh_1 400 428 IPR002048 GO:0005509
Vifa5g01187 533 SMART efh_1 364 392 IPR002048 GO:0005509
Vifa5g01187 533 SMART efh_1 436 464 IPR002048 GO:0005509
Vifa5g01187 533 SMART efh_1 472 500 IPR002048 GO:0005509
Vifa5g01187 533 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01187 533 CDD EFh 436 498 IPR002048 GO:0005509
Vifa5g01187 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 493 - -
Vifa5g01187 533 FunFam Calcium-dependent protein kinase 7 326 501 - -
Vifa5g01187 533 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01187 Vifa-Chr5 343756112 343762548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01187 43 530 EF-hand Containing Proteins AT1G74740 71.926 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa5g01187 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01187 K13412 - gmx:100783922 981.089