Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01184 ATGGATGGTCATCATCTACATCATCATCAACATCAACAACATCAACAACATCATCAACAACAACAACAACATCAACAACAACAAAGACAACAACAACAACAACATCAACAACAACATGTTCAAAACATCATAGGTACTAGCAATCTTAACATGGATGTCACCGATAGGTTCCCTCAATGGAGCATCCAAGAAACAAAGGAGTTTCTCATGATCCGTTCCGAGCTTGATCAAACTTTCATGGAGACAAAGAGAAACAAACAGCTTTGGGAAGTTATCTCTAACAACATGAAGGAAAAGGGTTATCATAGAAGTGCTGAACAGTGCAAGTGCAAATGGAAAAACCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGATAGAAGCTACAAAGCAACAATTTCCATTTTACAATGAGCTTCAAGCAATATTCAGTGCAAGGATGCAAAGAATGCTATGGGCGGAAGCTGAAGGAGGATCAAAGAAGAAAGGCATGCATGCATCTTCGGAGGAAGAAGAAGAGTTAGGAAATGAAGAAAGTGAAGGAGATCAGAAAGGTAACATTGGCAAAAAGAAGAAGAAAAAGGGAAAAATGGTGGTAGGTGGTGGAAGAAACGATGGTAGTAGTAGTAGTGGCAACAATTTGAAGGAGATTCTTGAGGAGTTCATGAGGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGGGAGAATGAGAGGAGGATGAAGGAGATGGAGTGGAGACAAACAATGGAAGCATTGGAGAATGAGAGGATGATGATGGAACAAAGATGGAGAGAGAGAGAAGAACAAAGAAGGGTTAGAGAAGAAGCTAGGGCTGAAAAGAGAGATGCATTATTCACTGCTCTTCTTGATAAGCTCACAAGAGAAGATAAGTAG 912 0.4013 MDGHHLHHHQHQQHQQHHQQQQQHQQQQRQQQQQHQQQHVQNIIGTSNLNMDVTDRFPQWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEIEATKQQFPFYNELQAIFSARMQRMLWAEAEGGSKKKGMHASSEEEEELGNEESEGDQKGNIGKKKKKKGKMVVGGGRNDGSSSSGNNLKEILEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRQTMEALENERMMMEQRWREREEQRRVREEARAEKRDALFTALLDKLTREDK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01184 303 ProSiteProfiles Myb-like domain profile. 60 116 IPR001005 -
Vifa5g01184 303 FunFam Zinc finger and SCAN domain-containing 20 60 121 - -
Vifa5g01184 303 Gene3D - 60 121 - -
Vifa5g01184 303 CDD GT1 58 123 - -
Vifa5g01184 303 MobiDBLite consensus disorder prediction 159 213 - -
Vifa5g01184 303 MobiDBLite consensus disorder prediction 16 39 - -
Vifa5g01184 303 PANTHER FI21293P1 10 299 - -
Vifa5g01184 303 Pfam Myb/SANT-like DNA-binding domain 59 143 IPR044822 -
Vifa5g01184 303 MobiDBLite consensus disorder prediction 1 39 - -
Vifa5g01184 303 Coils Coil 248 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01184 Vifa-Chr5 342231559 342232726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01184 55 301 Trihelix Transcription Factor Family AT5G01380 54.074 1.08e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g01184 Myb_DNA-bind_4 3.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01184 - - tpra:123892994 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01184 5 342231559 342232726 Vifa5g01184 5 342231559 342232726 ECH