Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01149 ATGACTGATGCAAATGTTGCTGCATTTGAGGAATTTCTCCAAGGATGGTTGAATCGTCAAAGAAACTACCTTGATGAGCTTCTTTCAGCTCAAGAACTTGATCAACAGATGGATGGTACCGAAAGAATGAATCTGTTAAACAGAGTAATCTGTCACTATGGACAATACTATGAAGAGAAATCAAAGATAGCCCATCAGAATATTCTTCTTCTTTTCTCACCACCATGGTTCAGTTCATTGGAAAAAACTTATCTTTGGCTTGCAGGGTTCAAACCAGGGCTTGCATTTCATCTTGTGAGCAAAACTCTTGAGGATTTGTCAGAGGAGCAGAAGGAGATGTTGAATGAACTCAAACAAGAGACTAAGATGAAGGAGAGAGAACTCAATGATGAGATGGCTAAGGTTCATGAGAGTACCGCGGCGCCACCGCTTGTTGACATGATTAGAAGCCATGGGAGAGTGTGTTTGAGTAGGTCATTCATGGCTCAGGAAAGTACTGTTTCAAACACATTGAAAGAAACTTTGGAGAATTTGGTAACAAATGCTGATGCTTTGAGGACTGAGACAGCTTTGAGAGTCGTGCAGATACTGAGACCTGCTCAAGTTCTTAACTTTTTTGTTGCTGTGGCTGAGCTTCAGCTTAGGGTCAGGTCTTTGGGTTTGGATAAGGATTCTGAGAGTGGAAATCAAGGGTGA 696 0.4167 MTDANVAAFEEFLQGWLNRQRNYLDELLSAQELDQQMDGTERMNLLNRVICHYGQYYEEKSKIAHQNILLLFSPPWFSSLEKTYLWLAGFKPGLAFHLVSKTLEDLSEEQKEMLNELKQETKMKERELNDEMAKVHESTAAPPLVDMIRSHGRVCLSRSFMAQESTVSNTLKETLENLVTNADALRTETALRVVQILRPAQVLNFFVAVAELQLRVRSLGLDKDSESGNQG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01149 231 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 8 229 - -
Vifa5g01149 231 Coils Coil 100 134 - -
Vifa5g01149 231 Coils Coil 168 188 - -
Vifa5g01149 231 Pfam Seed dormancy control 25 100 IPR025422 GO:0006351|GO:0043565
Vifa5g01149 231 ProSiteProfiles DOG1 domain profile. 6 226 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01149 Vifa-Chr5 337212606 337213301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01149 8 219 bZIP Transcription Factor Family AT5G06960 28.774 1.22e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01149 - - gmx:100780874 335.495