Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01127 ATGATTCAACAAGAAATTTTTCACTCTCCATGGCCATTAGTTTATGAAGACATAAACTCATCAACTTTTGATCATCATCATCATCATCATCATCAAGTTGTTGATCCATATAGCTTCACCATGGTAAACCATGTTGATGATGACTATATTCCATATGGCTTCATCATGGATGACCATGTTGAGAAGTTTGATCCATATGGCATCATCATGGATGACCATGTTGAGAAGTTTGATCCATATGACATCATCATGGATGACCATGTTGATGATTATGAATTCAATACTCTATTAAGCACCTCAGATAGTACTACTCTCTCTGAAATCTCCATATTCACCAATGATCATATCCAATTTCCAATTGAACAAGAAACCTTAGAACTTCCATCACTAATGGAATTTGAATCTTTTCATTCAATTTTGTGTCCCCAAATTGTTGATATTCAAGATCATGAATATCAAGAAGAGACTGAAGCAAGCTTCCCTTCACAAAATCTTTCCTATGATGAACGGAGTCCAACACAATCAATGAAATCAGATTTTTCCTCAACACAACAATCACTTATTCTTCCACAAGAAAACATGGAAATTGACAACAAAGTGATTCTTCCACACTTGATGGAAGCACATGGAGAAGCTTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTCACTCCACTTGGTGATTCTCTTGAAACTCTTGCATTTTATTTGTCACAAAAAGTGACAGATCATGAAGATTATCTCAAAGGGGAAGCTCTCAAGAATTTTGAAGAAGCTTTTAAGGTAATTTATCAAGGTAATCCAATTGGAAAAATTGCTCATTTTGCAGCTATTTCATCTATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAGATTCACATAATAGATTTTTGTATTGGAAATGGTGTTCAATGGCCTTTTTTATTGGAGGCTGTTTCAAAAATGAAGAAAAGATTGAAATTGACATCAATTAAATGGAGTGATGAAAGTTCTGAATCTGTTTGGAATTTTGAGGATACCAAAAGGGAACTATATGATTATGCTAAATCATGTGGTTTGAAATTGAAGGCAGAGGAAAAAGAATTGGAAGAGTTGGTTAGTGAGATCAAAAGAATGAACAAAAGGGGTTTGAAGAAAGAGTTTTTGGCTTTTAATTTGATGCTTGGTCTTCCTCATATGGGAATGGTAAGAAGCAGAAGAAAAAGTGCTTTTGAGTTTTTGAAAGTAGCTGAGGGTTTGATCAAGAACTATGGTAGCAAGGGAATGATTACTTTTGGTGATGGTGATGCATTTGAAAAACTAAAAAATTGTATGAATTTTAAGTCATTTTATGAAGGGAATTTGATGCATTATAAGGCCTTGTTGGAATCAATTGAGTCACAATTTTCAGAAAAATTCTCAGAAGCAAGAATTGCATGTGAAGTGTTGTTTGTTGCACCTTGTATATCTTCTCTTGATTGGTTACAAACATGGGAAGAGATGAAAAGGGGTGGTAATTTTGAGGTTGAGTTTAGCTTGGAAGGTGGAAGATTGAGCAAAAATGTTTTGATGGAAGTAAGAGAAGTTTTGAGAGGAAGTGGAAGTTCATATGAGACAAGAATTGAAGGACAAAATGAGAATGAACTTGTTTTGGAATGGAAAGGAACTCAATTATTAAGATTTTCAAGTTGGAAAAACTAA 1710 0.3421 MIQQEIFHSPWPLVYEDINSSTFDHHHHHHHQVVDPYSFTMVNHVDDDYIPYGFIMDDHVEKFDPYGIIMDDHVEKFDPYDIIMDDHVDDYEFNTLLSTSDSTTLSEISIFTNDHIQFPIEQETLELPSLMEFESFHSILCPQIVDIQDHEYQEETEASFPSQNLSYDERSPTQSMKSDFSSTQQSLILPQENMEIDNKVILPHLMEAHGEALEKGQKALAEVNLKCISQKVTPLGDSLETLAFYLSQKVTDHEDYLKGEALKNFEEAFKVIYQGNPIGKIAHFAAISSILEAAMLEDCDEIHIIDFCIGNGVQWPFLLEAVSKMKKRLKLTSIKWSDESSESVWNFEDTKRELYDYAKSCGLKLKAEEKELEELVSEIKRMNKRGLKKEFLAFNLMLGLPHMGMVRSRRKSAFEFLKVAEGLIKNYGSKGMITFGDGDAFEKLKNCMNFKSFYEGNLMHYKALLESIESQFSEKFSEARIACEVLFVAPCISSLDWLQTWEEMKRGGNFEVEFSLEGGRLSKNVLMEVREVLRGSGSSYETRIEGQNENELVLEWKGTQLLRFSSWKN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01127 569 Coils Coil 358 385 - -
Vifa5g01127 569 MobiDBLite consensus disorder prediction 157 184 - -
Vifa5g01127 569 Pfam GRAS domain family 208 568 IPR005202 -
Vifa5g01127 569 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 557 IPR005202 -
Vifa5g01127 569 MobiDBLite consensus disorder prediction 153 184 - -
Vifa5g01127 569 ProSiteProfiles GRAS family profile. 193 568 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01127 Vifa-Chr5 333599040 333600749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01127 221 568 GRAS Transcription Factor Family AT5G66770 24.932 8.61e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa5g01127 GRAS 4.6e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01127 - - tpra:123890000 818.15