Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01123 ATGGATATGAAGGAGGAAGAAACATGTGGCTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAAGATGGTTGTGAAATTAGTGATGCAAATGAAGATTATCAAGCAAGTAAGCAAAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAGGAGAATTCTGAAAAGAAACCATCAGTGAGACCTTATGTTAGATCCAAGTTTCCTAGACTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTAAGTATTGCTCATGTGAAGAGTCATTTACAGATGCATAGAACCAAGAAAGTAGTTGACACAAATCAAGACAAAAATATTTATAATCTCACCCAACTTCCTATGCTTCAAGGCTATACTCCAAATCAAAGTTCATCATATAGATGTGGATACGGGGATGCATCTCTTTCTATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAAAATGATTGAGAGAACCAACAATAAGACTCGTAGTGTTTTCCAAGTGGATTCTTCCAATTTTAGAGAACTATTATCAACAAGTCAAGTTCATGAGCCCAAAGAAAATTTCCTCTCATTTTGTAGCCATGAATCTTTAAGAGATAATCTCCATACTCGGCCAATAGTCCAAGACTTCATGCAAAATGATATTTTGCCTGCAAATCAAGTAGAATTGAAGACACTAAAAAGAAAAGCTTCAGATTTGGATCTTGATTTGGATCTATCACTTAAGTTAAGTTCAAGAAACATCATTGGTGATCATCAGAAGCAAGGAAGTATTGAAGATCATCTAGAAGTTGACAGCAATTTATCTCTCTCTTTGTATACTCAATCCTCTTATGATGATTCTAAGGAGCAAGAAAAAAGAGTCAATATAGGTTTGGATCTAACCATATGA 996 0.3464 MDMKEEETCGSICSKTSVSINEDGCEISDANEDYQASKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMHRTKKVVDTNQDKNIYNLTQLPMLQGYTPNQSSSYRCGYGDASLSMYENMVHMSSINESRADFYGKMIERTNNKTRSVFQVDSSNFRELLSTSQVHEPKENFLSFCSHESLRDNLHTRPIVQDFMQNDILPANQVELKTLKRKASDLDLDLDLSLKLSSRNIIGDHQKQGSIEDHLEVDSNLSLSLYTQSSYDDSKEQEKRVNIGLDLTI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01123 331 MobiDBLite consensus disorder prediction 32 55 - -
Vifa5g01123 331 Pfam Myb-like DNA-binding domain 73 122 IPR001005 -
Vifa5g01123 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 126 IPR006447 GO:0003677
Vifa5g01123 331 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Vifa5g01123 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
Vifa5g01123 331 Gene3D - 71 127 - -
Vifa5g01123 331 MobiDBLite consensus disorder prediction 29 63 - -
Vifa5g01123 331 FunFam Myb family transcription factor 69 127 - -
Vifa5g01123 331 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 39 215 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01123 Vifa-Chr5 332551504 332553132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01123 62 127 G2-like Transcription Factor Family AT2G42660 75.758 7.85e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g01123 Myb_DNA-binding 9.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01123 - - cam:101498576 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01123 5 332551504 332553132 Vifa5g01123 5 332551504 332553132 ECH