Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01122 ATGGCCATGGCACCAGCATACGAAGGAAACCTTCCAGCATCACCAGAATGGCTAAACAAAGGAGACAACGCATGGCAGATGACAGCAGCCACACTTGTTGGGCTCCAAAGCATGCCGGGACTGGTGATTCTCTACGCCAGCATAGTGAAAAAGAAATGGGCTGTGAATTCAGCTTTCATGGCACTTTACGCTTTTGCGGCGGTTTTAATCTGCTGGGTACTTGTGGCTTACAGAATGGCTTTTGGTGAAAAGTTGTTACCCTTTTGGGGTAAAGGAGGACCTGCTTTAGGACAGAAGTTTCTGGTTAGAAGAGCAAGAGTACCTGCGAGTACTCATTATTACAAGAATGGTCGTGTTGAGACAGAGATGGAAGAACCGTTTTTCCCTATGGCTTCACTTGTGTATTTTCAGTTTACTTTTGCGGCGATTACTATGATTTTGTTGGCGGGTTCGGTTCTTGGGAGGATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGGCTTGTTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGGGGGTTTCTTTATCATTGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCATCTATCTTCTGGGATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGACAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCGGGAGCTGGATTGTTATGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAATGTTGTATCTTCAATTGCTGTGTTGAACACAAACATTTGTGCAGCAACTAGTCTTCTTGTTTGGACAACTCTTGATGTTATTTTCTTTGGGAAGCCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTGTGTATCACACCAGGAGCAGGTCTTGTGCAATCGTGGGCAGCTATTGTGATGGGAATACTATCAGGGAGCATTCCGTGGGTATCCATGATGATCTTGCATAAAAAATCAAGTCTTCTACAAAAGGTTGATGACACTCTTGGAGTATTTCACACGCATGCTGTGGCTGGCCTATTAGGCGGCCTCCTCACCGGACTCTTGGCCGAGCCGGCCCTATGTCGATTAGTATTGCCGGTGACCAATTCAAGAGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTCCTAAAGCAATTAGTGGCAGCCATGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAATTGTTCATACCTTTGAGAATGCCCGACGAGCAGCTCGAAATCGGAGACGATGCGGCTCACGGTGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGGCATGGCTCCTTAAATCCTGGTACCACTGGAGTTTCACCTTATGTTAATGGTGCAAGAGGTGTGACAATAAATTTGTGA 1461 0.4524 MAMAPAYEGNLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGEKLLPFWGKGGPALGQKFLVRRARVPASTHYYKNGRVETEMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLVFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVVSSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLVLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQLFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNPGTTGVSPYVNGARGVTINL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01122 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa5g01122 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Vifa5g01122 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Vifa5g01122 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Vifa5g01122 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Vifa5g01122 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Vifa5g01122 486 Gene3D Ammonium transporter AmtB like domains 7 451 IPR029020 -
Vifa5g01122 486 PANTHER AMMONIUM TRANSPORTER MEP2 11 458 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa5g01122 486 FunFam Ammonium transporter 6 451 - -
Vifa5g01122 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vifa5g01122 486 SUPERFAMILY Ammonium transporter 17 430 - -
Vifa5g01122 486 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01122 Vifa-Chr5 331972059 331976920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01122 130 486 Inorganic Solute Cotransporters AT2G38290 78.552 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01122 K03320 - gmx:100790119 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01122 5 331972059 331976920 Vifa5g01122 5 331972059 331976920 ECH