Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01120 ATGGAGTGTAACGTTCCTTCAGGGTCATCTTCAAAGACAAAGGGTGTGAAGAAAAGCAAAGGAACATCGTCGGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGACATAGGATCAGTGACAGGTTCAAGATTCTTCAGAGTATGGTCCCTGGAGGAAGTAAAATGGATACTGTTTCTATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGTTTCATCAAACAATGATTAACTTTGTTGATCATGATAGTGATCATCATGAGGCTTTTTCGCCGATGTTCCTTCCAAATGATAACACCATTGATCAGCATAATGTTTTAGGTTCAGTTGAATCTGGCCAGAATTTGCAACAGTTGCCACTAGAGCAGTTTTGTTTTCAACAAGGTGATGAAGATGTCAAAACCATGTTTAATGCTACTAGGAAATATTAG 462 0.3766 MECNVPSGSSSKTKGVKKSKGTSSVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQILFHQTMINFVDHDSDHHEAFSPMFLPNDNTIDQHNVLGSVESGQNLQQLPLEQFCFQQGDEDVKTMFNATRKY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01120 153 FunFam Transcription factor LAX PANICLE 30 94 - -
Vifa5g01120 153 MobiDBLite consensus disorder prediction 1 31 - -
Vifa5g01120 153 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 76 IPR011598 GO:0046983
Vifa5g01120 153 SMART finulus 33 82 IPR011598 GO:0046983
Vifa5g01120 153 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 138 IPR045843 GO:0003700|GO:0006355
Vifa5g01120 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 88 IPR036638 GO:0046983
Vifa5g01120 153 CDD bHLH_AtIND_like 28 87 - -
Vifa5g01120 153 Gene3D - 31 85 IPR036638 GO:0046983
Vifa5g01120 153 MobiDBLite consensus disorder prediction 1 40 - -
Vifa5g01120 153 Pfam Helix-loop-helix DNA-binding domain 37 76 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01120 Vifa-Chr5 331379365 331379826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01120 24 109 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.872 1.53e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g01120 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01120 - - gmx:113000114 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01120 5 331379365 331379826 Vifa5g01120 5 331379365 331379826 ECH