Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01112 ATGAACCGTTCAGCCACCACATTGCTCATCATCGTCGCTACGTTGTGTTTTCTTTTGGAATTGGAAGCCAAATCAATCGACCCATATAAGGTTCTTGGGGTTGATAAAACTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCACAAACTCTCTCTTCAATATCATCCTGATAAGAACAAGGCCAAAGGGGCACAAGAGAAGTTTTCTCAGATAAATAATGCGTATGAGATTTTATCGGATGAAGAGAAGAGGAAGAATTATGACTTATATGGAGATGAGACAGGTAACCCTGGGTTTCAAACCGGTTATCCTAGAGGCCATGGTGGTTTTGGACATAGTGGCTTTAACTTCAAACCCGGGGAACATTGGGGTAGTGGCGACCAGGGAGGCTCTAAATCATTCTCCTTTTCCTTTGGCGGCGGCGATTCAAATTCTTTTGGGTTTGGTTTGGATGATCTTTTTGGAAACTTTTTTGGTGGCAATTCATTTGGGTCTAAATCTGGGTCCAGTTTTGGGAATTCATTTAGGTCTCAATCTGGGTCCAAGAGTTCCCCGAAAAGTCTTAAAGCCATAAACTCAAATGTATATAAGAAAGAAATAGTTGATGAAGGAATGACTTGGCTTTTGCTATCTTATATACCTTCATTGAGGGGCATCCAAAACTTTGAGTCCATTATAGGAGAGGTTTCCAGCACATTGCAAGGAGCTTTGAAGGTTGGAAGTATTAACTGTGAAAAAGAAGTCTCATTATGTAAAGAGATTGGTGTATATTCCCGCAAAGCTCCGAGGCTTTTTGTTTATTCTTACAAGGAGAATGAAAAGGGTTCTCTGGTGGAGTATGGTGGTGACTTGTCTGTTAAGGATTTGAAGGCTTTCTGCCAACAACACTTGCCAAGATTTTCAAAACGGATTGACTTGAATCAACTTGATCAGTTTAGCACTACTGGAAAGTTTCCCAGGGTGCTGCTTCTCTCCACTAAAAAGGATACTCCTGTAATCTGGCGTGTTATTAGTGGCTTGTATCGCAAACGCTTTACTTTCAGTGATGTACAGGTTTCTGATGTTTCTGATTCAAGTGTAAAAAAGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCAAATGGAGAAAAGCTTATTCTGAAAACAGGGGTTTCTGTGAAAGATATAAAATCTGGTGTACAAGATCTTAGTAACATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGAACAAGCTGATTCAGAAGATGGACACATTCAGTTGCTTTCTCGGACAAACTTCGAGTCTCTCTGTGGGGAGAAAACTCCAGTTTGCATAATCGGTGCTTTCAGATCTTCAAAAGCAAAGGAAAAGCTAGAATCACTTCTCTCATTGGTCTCACAGATGTCCTTGTCAAGAAAACCAAATGGTGGCGGAAGCTCTAGGGACGCCATTTCTTATGCTCTCTTAGATTCTGCAAAGCAACAATCCTTTCTAAACGCATTTGAGAAAACAGGTTATAAATCATCTGATAAGTTATTAATTGCGTACAAACCTCGGAAAGGAAAATTCGCTGTATTTACGGGTGAAATGACAATAGAGGATGTAGAGAATTTTATCAGCTCCGTTCTAAGTGGAGATATACCCTTTAGGGAAACACATAAGAAGCCTGTAGTGAAATAG 1695 0.4 MNRSATTLLIIVATLCFLLELEAKSIDPYKVLGVDKTASQREIQKAFHKLSLQYHPDKNKAKGAQEKFSQINNAYEILSDEEKRKNYDLYGDETGNPGFQTGYPRGHGGFGHSGFNFKPGEHWGSGDQGGSKSFSFSFGGGDSNSFGFGLDDLFGNFFGGNSFGSKSGSSFGNSFRSQSGSKSSPKSLKAINSNVYKKEIVDEGMTWLLLSYIPSLRGIQNFESIIGEVSSTLQGALKVGSINCEKEVSLCKEIGVYSRKAPRLFVYSYKENEKGSLVEYGGDLSVKDLKAFCQQHLPRFSKRIDLNQLDQFSTTGKFPRVLLLSTKKDTPVIWRVISGLYRKRFTFSDVQVSDVSDSSVKKLGVDALPAIVGWLPNGEKLILKTGVSVKDIKSGVQDLSNILDSFEKVSKKETSSQSKKEQADSEDGHIQLLSRTNFESLCGEKTPVCIIGAFRSSKAKEKLESLLSLVSQMSLSRKPNGGGSSRDAISYALLDSAKQQSFLNAFEKTGYKSSDKLLIAYKPRKGKFAVFTGEMTIEDVENFISSVLSGDIPFRETHKKPVVK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01112 564 Pfam DnaJ domain 27 88 IPR001623 -
Vifa5g01112 564 PRINTS DnaJ domain signature 47 62 IPR001623 -
Vifa5g01112 564 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vifa5g01112 564 PRINTS DnaJ domain signature 29 47 IPR001623 -
Vifa5g01112 564 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vifa5g01112 564 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Vifa5g01112 564 Coils Coil 61 81 - -
Vifa5g01112 564 SMART dnaj_3 26 83 IPR001623 -
Vifa5g01112 564 PANTHER DNAJ PROTEIN ERDJ3A 9 563 - -
Vifa5g01112 564 SUPERFAMILY Chaperone J-domain 24 118 IPR036869 -
Vifa5g01112 564 SUPERFAMILY Thioredoxin-like 191 297 IPR036249 -
Vifa5g01112 564 CDD DnaJ 27 80 IPR001623 -
Vifa5g01112 564 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Vifa5g01112 564 Gene3D Glutaredoxin 185 305 - -
Vifa5g01112 564 Gene3D DnaJ domain 25 171 IPR036869 -
Vifa5g01112 564 CDD PDI_a_family 198 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01112 Vifa-Chr5 327611844 327614517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01112 29 90 C2H2 Transcription Factor Family AT1G74250 42.647 2.66e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01112 - - gmx:100796871 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01112 5 327611844 327614517 Vifa5g01112 5 327611844 327614517 ECH