Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01108 ATGGCTTTCTCAACAATAACTGAGAAGAAAAATGTTTTGTTCATAATGGGTGCAACTGGAACTGGAAAAACTAAACTTTCTATTAACATAGGTATTCAATTCCCTTCTGAAATCATTAACTCGGACAAAATTCAAGTTTATAAGGGTCTTGACATTGTCACCAATAAGGTACCCGAATCTGAGCAATGTTTGATTCCCCATCACATGTTAGGTATCATAGATGATCCTGATTATGATTTCACTGTGAATGATTTTTGCGAGAAAATGGTTGAAACCCTAGATGTCATTGTTGAAAATGGACATCTACCTATTATTGTAGGTGGTTCAAATTCTTACCTACAAGTACTAGTAGATGACCCAATCTATGAGTTTCGTTTAAAATATAATTGTTGTTTCATTTGGGTGGATGTAGCTTTGTCTATTTTGTTTCCTTATTTAGACATGAGAGTTGATGAAATGGTTAAGGCTGGTCTTATTGATGAAATTAGAGACTTTTTTGCACCTGGAGCAAATTGCACAATGGGGATTAGAAGGGCAATTGGTGTTCCTGAGCTTCAACGCTATTTTGAGATAGAAAATGCTCAAGGTATTGATGATGGTCATAAAGAAAAGATACTTAAAGAAGCTATTACAGAAATGAAAGAAAACACATGCAAATTGGCTGAAAATCAACTCATAAAGATTGATAATATGGTTAATGGGCTTGGGTGGAACATGCACAAAATTGATTCTACAAAGGTCTTTGAAGCTGTTTTAAAGGGAGAAGATTATCAACATTTGTATCAAGAAATTGTGGTTAAGCCAAGCCTTGAGATAGTTAAGAGTTTTTTAGAGGAGTAA 840 0.3429 MAFSTITEKKNVLFIMGATGTGKTKLSINIGIQFPSEIINSDKIQVYKGLDIVTNKVPESEQCLIPHHMLGIIDDPDYDFTVNDFCEKMVETLDVIVENGHLPIIVGGSNSYLQVLVDDPIYEFRLKYNCCFIWVDVALSILFPYLDMRVDEMVKAGLIDEIRDFFAPGANCTMGIRRAIGVPELQRYFEIENAQGIDDGHKEKILKEAITEMKENTCKLAENQLIKIDNMVNGLGWNMHKIDSTKVFEAVLKGEDYQHLYQEIVVKPSLEIVKSFLEE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01108 279 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 139 239 - -
Vifa5g01108 279 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 277 IPR039657 -
Vifa5g01108 279 Pfam IPP transferase 45 119 - -
Vifa5g01108 279 Pfam IPP transferase 127 225 - -
Vifa5g01108 279 FunFam Adenylate isopentenyltransferase 5, chloroplastic 139 239 - -
Vifa5g01108 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 198 IPR027417 -
Vifa5g01108 279 Gene3D - 9 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01108 Vifa-Chr5 326771445 326772284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01108 127 278 C2H2 Transcription Factor Family AT2G27760 32.768 1.44e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01108 K10760 - mtr:11405692 392.504