Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01094 ATGAAGATTGATACTGTTTCTGGAGAAAGGAAATCACGCAAGAGACGCAGTGGTGGAAGAAGGGACTCAGTGGAAGATACGCTTGAGAAGTGGAAGAAATACAACAAGCAACAACAGCAAAAACTTGGTTGTGGAGATAATGGAGCTGAAAAGGTTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCGGAGATTCGTGAACCTATCAATGGTAAACATGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAATGCTCGTTTGAACTTTCCTAATGGATTACCACCTTCATCATCAAGTGGTGGTTCAGGTTCTGTTGATTCTTTGAACGGTGAGGAGGATCTTGCGAAAGTTGAAGAGTTGGAGGGTAATCTTCATCTCTCTGATGAAGAGAATAAGATTCTTTCTAAAGATTTTGTTGCTGATGACGGCTCGGTAGAGGAACTGAAAGAAGGGATGATAACTAGCACTGTCCAATGTAAAACTAATAAGAGATATAAGAAAATTGTTCGTCAAGAGTCCTACAAGAATGTTAAATCTGAAACCCGTGGAGAAAACGAACGGGTAGAGAGTGAATCAGAGAAGGTTTTGGAGAATTCTGGTATGGGTGGAGAGTGTTATCATGTACAGAAGGAGTATATAGATTTAGCTATGAACTCGGGAGCTGATTGTGGATCTTTTGATAGAGCAGAAAATGGGATTCTGGTGAAGAGTGAAGAAACAAGTAAAGGATCAGTTGAGGATTTGAAATCCTTTGAGTTGAACTGCCAACACAATTTCTTTGGAAACCTGCACAATATGCTTCCAGACATCAATCCAATACCAGAATCTGAGTATTCTAACATCAAAAACGACGCTTCTCTTGCTAAGAAACATAAGAAGGAAATAATTTCTGAAATCAAGGAATTTGATGAGATAAAAAATGAGCTTAAGGGATTGGAATGCAAGCTGAGAGGCCAGTCTATTGATTGCAATAATGACGAGGCTCAGAGATTACCTTGCGTGCAGGGAATTCATTTGTTTGGTGATGGCAGTGTTGGACCAATTGAAAGAACCTCCCGAGTTGAGGCTTTGAACAACAATACTAATAAAAGCAGTAATTTAAAAGAAAGAGGAAATAATGGAAGTGCACCTCATGGATTTAGTTTAGGGGAAAGCAGGAAGCTGAATGATCTTTCTCAACAGCTGCAGAAACTGGGTGGTTACTTTCCTGAAAATTGGAATAATATGCAGTTTGCAGATCTTGAAGTTGGTTATGATTATAGTTTCTTAAAACCTGATTATGATTTTGGTTTACTAGAAGAGAAGAAGTTACTAGATGTATGTTTTTCACATATAGGATCTTAA 1497 0.3914 MKIDTVSGERKSRKRRSGGRRDSVEDTLEKWKKYNKQQQQKLGCGDNGAEKVHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDKAAKAMYGPNARLNFPNGLPPSSSSGGSGSVDSLNGEEDLAKVEELEGNLHLSDEENKILSKDFVADDGSVEELKEGMITSTVQCKTNKRYKKIVRQESYKNVKSETRGENERVESESEKVLENSGMGGECYHVQKEYIDLAMNSGADCGSFDRAENGILVKSEETSKGSVEDLKSFELNCQHNFFGNLHNMLPDINPIPESEYSNIKNDASLAKKHKKEIISEIKEFDEIKNELKGLECKLRGQSIDCNNDEAQRLPCVQGIHLFGDGSVGPIERTSRVEALNNNTNKSSNLKERGNNGSAPHGFSLGESRKLNDLSQQLQKLGGYFPENWNNMQFADLEVGYDYSFLKPDYDFGLLEEKKLLDVCFSHIGS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01094 498 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Vifa5g01094 498 SUPERFAMILY DNA-binding domain 77 142 IPR016177 GO:0003677
Vifa5g01094 498 Coils Coil 21 41 - -
Vifa5g01094 498 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Vifa5g01094 498 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 290 - -
Vifa5g01094 498 MobiDBLite consensus disorder prediction 410 435 - -
Vifa5g01094 498 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Vifa5g01094 498 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g01094 498 Coils Coil 168 188 - -
Vifa5g01094 498 Coils Coil 339 366 - -
Vifa5g01094 498 FunFam Ethylene-responsive transcription factor 2 76 142 - -
Vifa5g01094 498 MobiDBLite consensus disorder prediction 1 77 - -
Vifa5g01094 498 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Vifa5g01094 498 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Vifa5g01094 498 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Vifa5g01094 498 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01094 Vifa-Chr5 322994604 322996224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01094 13 200 AP2-EREBP Transcription Factor Family AT2G40340 48.469 1.68e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g01094 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01094 - - tpra:123891882 730.324