LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g01091	ATGATACATACTTTCTTCCTTTTCTTCACCCTCCTTCTTTTCTATTTTCATTTTCATCCCGTCGTTTCTCTCTCCTCCGACGGCCTCGCTCTTCTAACGCTCAAGTCCGCCGTCAACGGCGATACCGCATCTGCATTTTCTGACTGGAACGAAAACGACCCTACTCCATGTCACTGGTCCGGCATTAGCTGCGCAAACATCTCCGGTGAGTCCGAAGCTCGTGTCGTCGGTATCGGTCTCGCCGGGAAAGGTCTCCGTGGCTACCTCCCGTCGGAGCTTGGAAACTTAATCTATCTCCGTCGTTTGAGTCTCCACACTAACCTCTTCCATGGCTCTATTCCTGTTCAGCTCTTCAATGCTACCTCTCTTCACAGCATCTTCCTCCATGGCAACAACCTCTCCGGTAACCTCTCTCCCTCCGTCTGCAACCTGCCACGTCTTCAAAATATTGACCTCTCACAAAATTCAATCTCTGGCACAATCCCGGAGTCTCTCGGAAACTGTGCAGAACTCCAGCGTCTTATCCTTGCAAGAAATAATTTCTCCGGTGACATTCCGGTGACTCCATGGATGAAGCTTAAGAATCTAGTTCAGCTTGACCTATCTGAGAATCTTCTAGAAGGTTCCATTCCGGAGCAAATTGGCTACCTGAACTCCCTTACCGGAACGCTAAACCTATCATTCAACCATCTATCAGGTGACGTTCCAAAGTCTCTAGGAAAGTTACCGGTGACGGTTAGCTTCGACCTTCGTAGCAATGATCTAAGTGGTGAAATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACCGCGTTTCTGAATAATCCCAAACTATGTGGGTTTCCTCTGCAAAAACAGTGCACCGGTTCAGCGAGTCAACCAGGGAGTAATCCTGGTTCAGCTCGACGAGAGGTGAACCGGTCGAAGAAAGGGTTGAGTCCGGGTTTGATTATTATTATAACAGTAGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTCTTGTTGTGTATGTGTATTGGAAAAAGAAAGATAACTCTAATGGGTGTAGTTGTACTTTGAAGAGAAAATTTGGTGGGAGTGGAAACAATGAAAAATCGGGTTTCTGTTGTTTTTGTTTGTCTTTAGGGTGTGCTAAGGGGTTTAAGAGTGATGATTCGGATATCGAAGAGAGTGAGAAAGGAGGAAGAGAAGGTGGTGGGGGTGGTAGAGGGGAAGGTGAAGGAGAAGGGAAAAGTGGATTAGGGATTGTGTATAAGGTAGTGCTTGGGAATGGTGTTCCTGTGGCTGTAAGGAGATTAGGGGAAGGTGGTGAACAAAGGTATAAGGAGTTTGCTGCTGAAGTTCAAGCTATTGGGAAAGTGAAACATCCTAACATTGTCAAGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTTTGATTAGTGATTTCATTTCCAATGGCAATTTGGCTAATGCTCTTAGAGGGAGAAATGGCCAACCATCTCCAAATCTTTCATGGTCAATCAGGCTGCGAATAGTCAAAGGAACAGCCAGAGGTTTAGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCACGGTGACCTCAAACCTTCCAATATCCTCCTCGACACAGACTTCCAACCTCTCATTTCTGATTTCGGTCTTAACAGGCTGATCAGCATCACCGGCAACAATCCCTCCACCGGCGGTTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAACGAATCAACAACTATAAAGCTCCTGAAGCCAGAATACCAGGCTGCAGACCCACCCAAAAATGGGATGTGTATTCATTTGGTGTTGTATTACTCGAATTGCTCACTGGTAAGTCCCCAGATTCTTCTCCAGGAGCATCAACTTCCGTGGAAGTCCCCGACTTGGTAAGGTGGGTTAAGAAAGGGTTTGAACAAGAAAGCCCTTTATCCGAAATGGTTGATCCATCACTTCTTCAAGAAATTCACGCCAAGAAAGAAGTACTTGCTGTATTCCATGTAGCACTATCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAACTGTTTCCGACAATCTTGAAAGAATTTGA	2100	0.46	MIHTFFLFFTLLLFYFHFHPVVSLSSDGLALLTLKSAVNGDTASAFSDWNENDPTPCHWSGISCANISGESEARVVGIGLAGKGLRGYLPSELGNLIYLRRLSLHTNLFHGSIPVQLFNATSLHSIFLHGNNLSGNLSPSVCNLPRLQNIDLSQNSISGTIPESLGNCAELQRLILARNNFSGDIPVTPWMKLKNLVQLDLSENLLEGSIPEQIGYLNSLTGTLNLSFNHLSGDVPKSLGKLPVTVSFDLRSNDLSGEIPQTGSFSNQGPTAFLNNPKLCGFPLQKQCTGSASQPGSNPGSARREVNRSKKGLSPGLIIIITVADAAGVALIGLLVVYVYWKKKDNSNGCSCTLKRKFGGSGNNEKSGFCCFCLSLGCAKGFKSDDSDIEESEKGGREGGGGGRGEGEGEGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSPNLSWSIRLRIVKGTARGLAYLHECSPRKFVHGDLKPSNILLDTDFQPLISDFGLNRLISITGNNPSTGGFMGGALPYLKSSQTERINNYKAPEARIPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSVEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSDNLERI	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g01091	699	Gene3D	Ribonuclease Inhibitor	190	290	IPR032675	-
	Vifa5g01091	699	Gene3D	Transferase(Phosphotransferase) domain 1	481	699	-	-
	Vifa5g01091	699	Gene3D	Ribonuclease Inhibitor	26	189	IPR032675	-
	Vifa5g01091	699	Pfam	Protein kinase domain	410	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01091	699	ProSiteProfiles	Protein kinase domain profile.	404	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01091	699	FunFam	Os07g0541700 protein	487	570	-	-
	Vifa5g01091	699	SUPERFAMILY	L domain-like	26	285	-	-
	Vifa5g01091	699	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
	Vifa5g01091	699	Gene3D	Phosphorylase Kinase; domain 1	410	480	-	-
	Vifa5g01091	699	SMART	serkin_6	402	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01091	699	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	219	699	IPR046959	-
	Vifa5g01091	699	MobiDBLite	consensus disorder prediction	383	405	-	-
	Vifa5g01091	699	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	24	191	-	-
	Vifa5g01091	699	Pfam	Leucine rich repeat N-terminal domain	25	64	IPR013210	-
	Vifa5g01091	699	MobiDBLite	consensus disorder prediction	383	411	-	-
	Vifa5g01091	699	SUPERFAMILY	Protein kinase-like (PK-like)	411	696	IPR011009	-
	Vifa5g01091	699	FunFam	Leucine-rich repeat receptor-like protein kinase	195	290	-	-
	Vifa5g01091	699	CDD	STKc_IRAK	415	699	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g01091	Vifa-Chr5	322712435	322716984	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g01091	20	699	Receptor kinase-like Gene Family	AT1G67510	66.807	0.0	920

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Vifa5g01091		Pkinase	1.4e-30	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g01091	-		-	gmx:100795021	1093.95