Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01090 ATGGAGCCTTCTCAAGATTTAGCATCAGAAGGAGAATTCAGTGGCACTGAGTCTGGATGGACCACTTACATTGGATCTCCTATCCCTAGTGAAATTTACCACGAGGAGGGAAGTGTAAACATGGAAGAATATGTCAACAAGTTCAAGAATGCTGATCGGATTCCCTTCGGTTCAGATTCATATTCACTTCTCAAACGACACTCAAACAGAAGGAGGAAACACCGGCCTCACATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTATTCATTTTAAGAACTTCGTATCTTACTTGCCGTATAAAGAATACACACATCCTGTAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCTTATGGAGTTGCTAAGGAGCTTGGGCGCGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTAAAGTGAAATTGGGTTCTGAGAATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAATTACATGATATTCATCAGGATGGGGAGGCTAATGATGATGGCACATCTGGGTCTAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGTGCTCTCTGGGATATTTTTCGAAGAAAGGATGTACCTATATTGGAGGGATATTTATACAAGCATTTCGGAGAGTTTAGTCATTTTGACTGCCATCCTTTAACGAAGGTTACTCACCCCATCCATGATCAGACATTTTATCTGACTATGGAGCATAAGAAGAAGCTTAAGCAGGAGTGTGGAATTGAGCCATGGACCTTCACTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCATCAATCGAAGAAGAAACTTTTAATTTTTGATATAAATGGGGTGCTTGCAGACGTAGAATTTGTCTGTACATCTGATGGAACACCTGAGTTTTCTCCAAAACCAGACAGGATATTGTGGCTATTTGGTCTTCAAAAGAAAGCCGCGCGTGGCGGCTCCTCTCTGGCGGTGCTTCCACCCGCTGAATCGGTTTTTCCTCCTGGATCCAGATCTGGTCTTGGTGTTTCCAAGAATTCAATTTATCTGTTCCAAGCCTAG 1221 0.4292 MEPSQDLASEGEFSGTESGWTTYIGSPIPSEIYHEEGSVNMEEYVNKFKNADRIPFGSDSYSLLKRHSNRRRKHRPHMLKLKDWPPSESFKECLPIHFKNFVSYLPYKEYTHPVSGSLNLAVKLPDGCLKPDMGPKAYIAYGVAKELGRGDSVTKLHCDMSDAVNVLTHVAKVKLGSENVTAIEKLMPKNLEQDKRELHDIHQDGEANDDGTSGSKLKEVEKGTVEQGDSLLDAVDSLDGALWDIFRRKDVPILEGYLYKHFGEFSHFDCHPLTKVTHPIHDQTFYLTMEHKKKLKQECGIEPWTFTQKLGDAVFIPAGCPHQSKKKLLIFDINGVLADVEFVCTSDGTPEFSPKPDRILWLFGLQKKAARGGSSLAVLPPAESVFPPGSRSGLGVSKNSIYLFQA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01090 406 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 70 324 IPR045109 GO:0032454|GO:0033169
Vifa5g01090 406 SUPERFAMILY Clavaminate synthase-like 80 323 - -
Vifa5g01090 406 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g01090 406 ProSiteProfiles JmjC domain profile. 113 360 IPR003347 -
Vifa5g01090 406 SMART cupin_9 94 344 IPR003347 -
Vifa5g01090 406 Pfam JmjC domain, hydroxylase 242 323 IPR003347 -
Vifa5g01090 406 Gene3D Cupin 32 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01090 Vifa-Chr5 322190392 322192765 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa5g01090 JmjC 8.2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01090 K15601 - thj:104802301 311.997