Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01082 ATGGGTGGCGTTGCATGGACAGAAGAAGAAGATCACTTGCTTAAGAAATGTATACAACAATATGGTGAAGGAAAGTGGCATAGGGTTCCTCTATTGGCTGGTCTAAACAGATGCCGAAAAAGTTGTAGGCTAAGATGGTTGAACTATCTTCGTCCTAACATCAAAAGAGGAAACTTTGCTGAGGAGGAAGTGGAAATGATTGTGAAACTCCACAAATTATTAGGCAACAGGTGGTCCTTAATTGCGGGAAGGCTTCCAGGAAGAACAGCGAATGATGTGAAAAACTATTGGAACTGTCATCTAAGCAAAAAACTAAATGCTCTAGAAGCTGATCAAGAAGGATCACAAATTTCTAAAGATGTTCAAATCATTAGGCCACAACCAAGAACCATTGGTTCAAGCTCGGTGAAAAAAAGGGGCCAAGGAGAGTCAGAAGCCGATAAAGTTCTAGTTCAAGAAGAGAATGACACAACAACGTTGGATGCTGATGGAAAGAATCATATGGTTGAAACACAACAAGACATGATGATGTATTCATGTTTGGACCAACAAGGAATGGTTGGTGGTGGTGAGTTTCCAATGGATTTTCAATTAGAAGGATTTGAAGCAATGGTAAATGGAGGAGAAGGTAGTAGTAGTAATAGTCAATGGAATTGGGATGATTTGCTCTTGGATATGGATCTGTATAATGATTTTTCTTCTTAG 705 0.3943 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEADQEGSQISKDVQIIRPQPRTIGSSSVKKRGQGESEADKVLVQEENDTTTLDADGKNHMVETQQDMMMYSCLDQQGMVGGGEFPMDFQLEGFEAMVNGGEGSSSNSQWNWDDLLLDMDLYNDFSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01082 234 SMART sant 2 52 IPR001005 -
Vifa5g01082 234 SMART sant 55 103 IPR001005 -
Vifa5g01082 234 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Vifa5g01082 234 Gene3D - 4 55 - -
Vifa5g01082 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vifa5g01082 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vifa5g01082 234 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vifa5g01082 234 FunFam Myb transcription factor 3 55 - -
Vifa5g01082 234 Gene3D - 57 123 - -
Vifa5g01082 234 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Vifa5g01082 234 CDD SANT 58 101 IPR001005 -
Vifa5g01082 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 156 - -
Vifa5g01082 234 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Vifa5g01082 234 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Vifa5g01082 234 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01082 Vifa-Chr5 320852571 320853841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01082 5 132 MYB Transcription Factor Family AT1G66370 60.870 4.57e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g01082 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01082 K09422 - gmx:100809746 345.51