Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01081 ATGCGGAAGCGCGCATACGCTAGAAAGACGTATAAGCAAGCCTTTCTTTATGAGTATGAGTCAACCAAGCCGCTTCAGAGAGGTCCCTCAACTCTCTCAACAGTCCAAGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTATTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 816 0.4326 MRKRAYARKTYKQAFLYEYESTKPLQRGPSTLSTVQGICCCRTVNQNYANIILMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNNKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKGLESPADGRRSSESSYRIGDNGTSGGTN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01081 271 SUPERFAMILY Class II aaRS and biotin synthetases 94 212 IPR045864 -
Vifa5g01081 271 MobiDBLite consensus disorder prediction 245 271 - -
Vifa5g01081 271 PANTHER THREONINE-TRNA LIGASE 111 243 - -
Vifa5g01081 271 PRINTS Threonyl-tRNA synthetase signature 220 232 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa5g01081 271 PRINTS Threonyl-tRNA synthetase signature 193 206 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa5g01081 271 PRINTS Threonyl-tRNA synthetase signature 149 177 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa5g01081 271 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 106 215 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa5g01081 271 Gene3D Bira Bifunctional Protein; Domain 2 77 218 IPR045864 -
Vifa5g01081 271 MobiDBLite consensus disorder prediction 251 271 - -
Vifa5g01081 271 Gene3D - 219 250 IPR036621 -
Vifa5g01081 271 SUPERFAMILY Class II aaRS ABD-related 213 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01081 Vifa-Chr5 320801837 320805217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01081 43 111 RAD5 or RAD16-like Gene Family AT1G50410 66.667 1.34e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01081 K01868 - gmx:100812652 258.84