Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01056 ATGGCTGAGAATTTTGAACACTATCATATCCCACAACAAAGCAGAAGAGAAAAACTCAGATTCTTATCTCAAAACCAAACATCTTTCATAGAATCTCCAACAACCCTAAACCCTACTTCAACACCTTTACCTTCTCTCTACGATCCTTCATTCATTTCACCTATTTTCTCACCTTCCACCAACCAAACAATTGAGGCTATTAACACCAACCCTTTTCTTTATCAAACTTACAACGATGGTGGTAACACCAACACTAACAGTGAAGTCATGTTGCTGAAATCTGAGCCTCTATCTTTGTCTTTATCATCGTCACAGCAGAATAACCTGACTCAGATGAGTGTTCATCATCCTCTAGAGGCTAATCTTCAGAGATATGGGTCTGTTGTTAATGGTGGTGGTGAGGTTTCGAGGAACACGGTTCCGTTGGGACCGTTCACGGGGTATGCTTCGGTTTTAAAGGGCTCGAGGTTTCTGAAACCTGCACAGCAATTGTTGGATGAGATTTGTGATGTTGGAGTTTGTGTTGAGAAGATTGTTTCTGCTGCTGATTTGTCGTTGATGGAGAATTCCATTCAGGAGAGGAATGGAATTGTTGATGATGGAAATGATGTTGAGGGTAGGAAGAACAAGTCTAGACTATTAAATGTGCTTGATGAGATTTGCAGGAGATATAGACAGTACTATCAGCAGATACATGCAGTAATAACTTCATTTGAACATGTTGCCGGCCTCGGTAACGCGGCTCCCTATGCAAGTTTGGCTATAAACAATACAAAGGACGAATCTCCAAGGTTTTACAACGGCGACAGAAGCCCTTACAGTGGAAGGCCGGAGTTTCTCGAACACGTTCAACAACCTGTTTGGCGACCACAGAGAGGACTACCTGAGCGTGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTTCACCCTTATCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTCTCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTAGAGGAAATACACATGCTCGAATCACAACAATCTCAGAAGGATCCATCACAAAGAGAAGAACTTATCCGGAAAAATCCGAGCGATAACAACTTTGCTGAGAATCAATCTACCTCCACAGACAAGTTCCACGACGGCTCTTATAAACGAACTAGAAACGAGCTTCACAATATGCCGGTGATGAATCAGAGTATTGCAAGCAATCAACAAGTCGGTAGTGTTGGAGTGAGCATGATGAATAATGGCACAACAAGCAATGGTGTCTCTCTCACACTTGGCCTACATCAAAACCATGGAATTGGGTTGTCCGAGCCCTTCGACATGAGTGCCGCTCACAGTTACGGTCTTGCAGTTCAACCTGATAGCTATGTCGCGAGTGGTTTTCTGTTGCAGAATAGACAGTTTGGGAGGGATTTTATTACAGGGCAACTTTTGCATGACTTTGTAGGGTGA 1500 0.4307 MAENFEHYHIPQQSRREKLRFLSQNQTSFIESPTTLNPTSTPLPSLYDPSFISPIFSPSTNQTIEAINTNPFLYQTYNDGGNTNTNSEVMLLKSEPLSLSLSSSQQNNLTQMSVHHPLEANLQRYGSVVNGGGEVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICDVGVCVEKIVSAADLSLMENSIQERNGIVDDGNDVEGRKNKSRLLNVLDEICRRYRQYYQQIHAVITSFEHVAGLGNAAPYASLAINNTKDESPRFYNGDRSPYSGRPEFLEHVQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKDPSQREELIRKNPSDNNFAENQSTSTDKFHDGSYKRTRNELHNMPVMNQSIASNQQVGSVGVSMMNNGTTSNGVSLTLGLHQNHGIGLSEPFDMSAAHSYGLAVQPDSYVASGFLLQNRQFGRDFITGQLLHDFVG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01056 499 SMART HOX_1 288 352 IPR001356 GO:0003677
Vifa5g01056 499 MobiDBLite consensus disorder prediction 377 391 - -
Vifa5g01056 499 CDD homeodomain 288 349 IPR001356 GO:0003677
Vifa5g01056 499 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 377 - -
Vifa5g01056 499 SMART prehox3 146 268 IPR006563 -
Vifa5g01056 499 SUPERFAMILY Homeodomain-like 290 355 IPR009057 -
Vifa5g01056 499 FunFam BEL1-like homeodomain protein 9 291 353 - -
Vifa5g01056 499 Gene3D - 291 353 - -
Vifa5g01056 499 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Vifa5g01056 499 Pfam Associated with HOX 151 256 IPR006563 -
Vifa5g01056 499 MobiDBLite consensus disorder prediction 357 396 - -
Vifa5g01056 499 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01056 Vifa-Chr5 311912273 311914536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01056 1 499 Homeobox Transcription Factor Family AT5G02030 42.237 3.75e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa5g01056 POX 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01056 - - mtr:11409415 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01056 5 311912273 311914536 Vifa5g01056 5 311912273 311914536 ECH