Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01042 ATGTCTTATAGCTATTTCCCCATTACTTTCCAAAGAAAGATGGAGTACACACAAAACCCTAATAAATCTGAGCAAATAAGATGGAACTCAGATGATATAGGTGGTCCAACACAAGCTAGATCCTATTCTTGTACTTTTTGCAAGAGAGGATTTTCAAATGCACAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAACAATCTTCTGAAGAAAACTTGCTTTCTTTGGACATATCAATCAAGAACACAAATGATCATGTTGATTTGGAAGAGAATCATGAAACTCAAAGAGGAAAGTTGGTTACAACAAAAGAACTTCCTCGTAGTTCTTCATTTGTTGATATAAAGGGAAGTGGTGGTGTGACACATAGGATTGAAGAGAATAAATGTGATTTGGACCTTGAGCTTAGGTTAGGTTATGAGCCAATAGGGTCATCATCATTGAGCACTCGATCATTCTTTTGA 486 0.3683 MSYSYFPITFQRKMEYTQNPNKSEQIRWNSDDIGGPTQARSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQQSSEENLLSLDISIKNTNDHVDLEENHETQRGKLVTTKELPRSSSFVDIKGSGGVTHRIEENKCDLDLELRLGYEPIGSSSLSTRSFF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01042 161 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vifa5g01042 161 Gene3D Classic Zinc Finger 23 118 - -
Vifa5g01042 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vifa5g01042 161 PANTHER OS07G0101800 PROTEIN 22 103 - -
Vifa5g01042 161 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01042 Vifa-Chr5 306769223 306769708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01042 14 150 C2H2 Transcription Factor Family AT3G09290 38.953 2.69e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g01042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01042 - - mtr:25498560 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01042 5 306769223 306769708 Vifa5g01042 5 306769223 306769708 ECH