Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01038 ATGCCAATTCATCTTCAATTCTTGATAACAGTTTTGCTCTTCCTCTCTGTGCCAGTTTCATCCCAACTTGACCACCTCATGTATGCAGGATTCAAGGATATTGATCCCAACAATCTAACCTTGAATGGAATAGCAGAGATAGAGAAAAACGGCATCATAAAGTTAACAAATGAAACAAGCAAACTAATGGGCCATGCTTTTTACTCTCAACCCTTTCAACTAAAGAATTCAACAACTGGTAAAGCTTTCTCCTTTTCTTCATCTTTTGCTATTGCTATTGTTCCTGAGTATCCTAAACTTGGTGGTCACGGCATGGCCTTCACAATAGCACCTACAAAAGATCTCAAAGCTTTACCTATTCAGTATCTTGGTCTTCTCAATTCAAATGATGTTGGTAATTTCTCTAACCATCTTTTTGCTGTTGAGCTTGACACTGTTCAAGACTTTGAGTTTGGTGATATCAATGATAACCATATTGGAATTGACATCAATAGTTTGCAGTCTAATGCATCTATTAATGCAAGCTATTACACTGATGATTCCACATTACAGAATCTTAATCTCAAAAGTGGGAAACCTATTCTTGTTTGGGTTGATTATGATTCTTCGCGGAGTCTTATTAGTGTTACACTTTCTCCAACTTCAACCAAACCGAAAAAACCAACCTTGTCTTTTACTATGGACCTATCACCTATTTTTCATGATACTATGTATGTTGGTTTCTCTGCTTCAACTGGTTTACTTTCTAGCTCTCATTATCTTTTGGGTTGGAGTTTCAAGATCAATGGACCTGCACCATTTCTTGATTTGTCTTCACTACCGCAACTTCCATTGCCGAAGAAGAAACAAACTTTGTTGATAACTGGTGTTTCAGTCACAGCTTCTGTTATTGTACTGTGTTCTATAGCTATTTCTATTTACCTTTTCAGAAAAATCATGAATGCTGATGTAATTGAATCATGGGAGCTTGAAGTTGGGCCACATAGATACTCCTATCAAGAGCTTAAGAAAGCTACAAAAGGCTTCAAGGAGAAAGAGCTACTCGGGCAAGGCGGTTTCGGAAGAGTTTACAAAGGGACATTACCGAAATCGAAAGTCCAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGCTGAGGGAATTTGTGTCGGAAATCGCAAGCCTAGGCCAGCTTCGCCATAGAAATTTGGTGCCGTTACTCGGATGGTGTCGTCATAGAGGCGACCTTTTACTTGTATACGATTTCATGGCGAATGGAAGCTTAGACAAGTATTTGTTTGAAGATTCAGAAATTGCGCTAAGTTGGGAACAAAGGTTTAAGATAATAAAAGGGGTTGCTTCGGGTCTTTTGTTTCTACATGAAGGGTATGAACAAGTTGTAATACATAGAGATGTTAAAGCTAGCAATGTGTTGTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGCTTGGCAAGGTTGTATGAACATGGTGCTAATCCAAGTACAACAAGAGTGGTGGGAACATTAGGCTATTTGGCACCAGAGTTGCCTAGAACAGGAAAGGCTTCTACAAACTCTGATGTTTTTGCATTTGGCGCGCTTCTGCTCGAGGTTACTTGCGGAAGAAGGCCCATTGAACCAAAGGCAATACAAGAAGAGCTAGTGTTGGTGGATTGGGTGTGGGAAAGGTTCAAAGAAGGAAGAGTAGTTGAAGTAGTGGATCCTAAAATGAATGGTAGTTTTGTTGAAAGTGAGGTAATGATGGTGCTGAAATTGGGCTTGATGTGTTCAAATGATGTTGCTACTATAAGGCCTAACATGAGACAAGTAGTGAGGATTTTGGATGGAGAAGTTGAGTTACCAAATGAAATGAGAAAGCCAGGAGGTGTTGAATCACTAGAAGGGTTTGATGAGTTCTTACATTCTCTTGGAACTTCTTCTTCTTTCGATAAGACGAATTCAAACTCTTAG 1965 0.3908 MPIHLQFLITVLLFLSVPVSSQLDHLMYAGFKDIDPNNLTLNGIAEIEKNGIIKLTNETSKLMGHAFYSQPFQLKNSTTGKAFSFSSSFAIAIVPEYPKLGGHGMAFTIAPTKDLKALPIQYLGLLNSNDVGNFSNHLFAVELDTVQDFEFGDINDNHIGIDINSLQSNASINASYYTDDSTLQNLNLKSGKPILVWVDYDSSRSLISVTLSPTSTKPKKPTLSFTMDLSPIFHDTMYVGFSASTGLLSSSHYLLGWSFKINGPAPFLDLSSLPQLPLPKKKQTLLITGVSVTASVIVLCSIAISIYLFRKIMNADVIESWELEVGPHRYSYQELKKATKGFKEKELLGQGGFGRVYKGTLPKSKVQVAVKRVSHESKQGLREFVSEIASLGQLRHRNLVPLLGWCRHRGDLLLVYDFMANGSLDKYLFEDSEIALSWEQRFKIIKGVASGLLFLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKASTNSDVFAFGALLLEVTCGRRPIEPKAIQEELVLVDWVWERFKEGRVVEVVDPKMNGSFVESEVMMVLKLGLMCSNDVATIRPNMRQVVRILDGEVELPNEMRKPGGVESLEGFDEFLHSLGTSSSFDKTNSNS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01038 654 FunFam Lectin-domain containing receptor kinase A4.3 327 418 - -
Vifa5g01038 654 SMART serkin_6 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01038 654 CDD STKc_IRAK 348 614 - -
Vifa5g01038 654 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Vifa5g01038 654 SUPERFAMILY Protein kinase-like (PK-like) 324 619 IPR011009 -
Vifa5g01038 654 Pfam Legume lectin domain 27 273 IPR001220 GO:0030246
Vifa5g01038 654 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672|GO:0006468
Vifa5g01038 654 ProSiteProfiles Protein kinase domain profile. 342 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01038 654 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Vifa5g01038 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 281 IPR013320 -
Vifa5g01038 654 CDD lectin_legume_LecRK_Arcelin_ConA 28 263 IPR001220 GO:0030246
Vifa5g01038 654 PANTHER - 42 619 - -
Vifa5g01038 654 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Vifa5g01038 654 Gene3D - 26 262 - -
Vifa5g01038 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vifa5g01038 654 Gene3D Transferase(Phosphotransferase) domain 1 419 627 - -
Vifa5g01038 654 FunFam L-type lectin-domain containing receptor kinase S.4 419 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01038 Vifa-Chr5 305868466 305870430 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01038 19 625 Receptor kinase-like Gene Family AT3G55550 60.261 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa5g01038 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01038 - - gmx:100816866 985.711