Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01035 ATGTCTTTCAACCTTGTAGCAATAGTTTCTATGTTTGTAACATTAGTAGTAGTTGTAGCAAGTGAAGATAGCAATATCAGTTTCATCTATAATGGATTCAAATCATCACATTTGTATCTTGATGGTGTTGCTGAGTTAACTTCTAATGGATTACTTAGATTAACCAATGATACCAAACAAGAAAAGGGTCATGCTTTCTATCCAAATCCTATAGTTTTCAACAATGGAAGTAGTAGTGTGTTTTCTTTCTCAACTAGTTTTGTTTTTGCTATAAGATCAGAGTTTGGTTCTCTTAGTGGTCATGGAATTGTTTTTGTTGTTTCTCCAACAAAAGGGTTGCCGAATTCACTACCAAGTCAATATCTTGGCTTGTTCAATGAAACAAACATAGGAAACAAGAATAGCCATGTTTTTGGTTTAGAGCTTGATACAATTTTGAATACTGAGTTTGATGATATCAATGACAACCATGTTGGAATTGATATCAATGGATTGAAATCAGAAAAATCGGCTTCGGCCGGATATTATGACATAGGTGGTAATGAGTTCAAGAATTTGAGCCTTTTCAGTGGCTTACCAATGCAAGTTTGGTTGGAGTATGATGGTGGAAAGAAGAAGATTGATGTTACTTTAGCTCCAATGAATGTTGTGAAACCAGAAAAAGCCTTGTTATCATTGAACAAAGATCTTTCTTCTGTTATTGACAATAGTACTATGTATGTTGGATTCTCATCTTCAACAGTATGTTTGATTCTAATGGTAGCTATAGCAATGTTTCATTTCATCAAGAGAAAGAAAATGTTCTCTGAGCTTCATGAGGATTGGGAGAAAGACTATGGAACTCAAAGATTCAAGTACAAAGATTTATACTTTGCAACAAAGGGTTTCAAGGAGAAAGAGCTGTTAGGAACAGGTGGATTTGGTAGAGTCTACAAAGGAGTGATGCCAATTTCAAAGCTTGAGGTAGCTGTGAAGAGAGTTTCACATGAATCAAGACAAGGGATGAAGGAATTTGTGGCGGAGATTGTTAGTATCGGTCGTCTTCGTCATAGGAATCTTGTTCCACTTCTGGGCTATTGCAGGCGAAAAGGCGAGTTACTTCTTGTCTATGACTACATGCAAAATGGAAGCTTGGACAAATATTTACACAACAGAAAACAAAGATTTACCTTAAATTGGAGTCAAAGGTTTAGGATCATTAAAGGTGTTGCTTCTGGTTTGTTTTATTTACATGAAGAGTGGGAGCAAGTTGTGGTTCATAGAGATATTAAAGCTAGTAATGTTTTATTAGATGGTGAATTGAATGGAAGATTAGGTGATTTTGGTCTTTCAAGATTATATGATCATGGAACTGATCCTCAAACAACACATGTTGTTGGAACACTTGGTTATTTAGCACCTGAGCATACAAGAACAGGTAAAGCTACAACAAGTTCTGATGTGTATTCTTTTGGTGCTTTTTTGCTTGAGGTTGTTTGTGGTAAAAGGCCTATAGAACAAGTAAGGGAATGTGAGAGTTTGATATTGGTTGATTATGTTTATGATTGTTGGAAAAGAGGTGAGATTGTTGAGGCTAGAGATGTAAATTTGGGTGTGGATTATGTGGTTGGAGAAGTTGAATTGGTGTTGAAACTTGGTTTGTTGTGTTCACATTGTGAGGCATTGGCTAGGCCAAGTATGAGACAAGTTTTGAGGTATTTGGAGAGGGATTTGCCACTTCCTGATTTGTCTTTTCTTAGTTTGTCTTCAATGGGAGTAACTTCTGGACAATGTGAAAATTTTCAAGATTTTGGTATGTCTTATGCTTCTTCTTCTATGGATAGACCATTCTCTCATACTTCTTCAATTGCTGAATCACTTCTTTCTGGTGGTCGTTAG 1878 0.3605 MSFNLVAIVSMFVTLVVVVASEDSNISFIYNGFKSSHLYLDGVAELTSNGLLRLTNDTKQEKGHAFYPNPIVFNNGSSSVFSFSTSFVFAIRSEFGSLSGHGIVFVVSPTKGLPNSLPSQYLGLFNETNIGNKNSHVFGLELDTILNTEFDDINDNHVGIDINGLKSEKSASAGYYDIGGNEFKNLSLFSGLPMQVWLEYDGGKKKIDVTLAPMNVVKPEKALLSLNKDLSSVIDNSTMYVGFSSSTVCLILMVAIAMFHFIKRKKMFSELHEDWEKDYGTQRFKYKDLYFATKGFKEKELLGTGGFGRVYKGVMPISKLEVAVKRVSHESRQGMKEFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMQNGSLDKYLHNRKQRFTLNWSQRFRIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDGELNGRLGDFGLSRLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATTSSDVYSFGAFLLEVVCGKRPIEQVRECESLILVDYVYDCWKRGEIVEARDVNLGVDYVVGEVELVLKLGLLCSHCEALARPSMRQVLRYLERDLPLPDLSFLSLSSMGVTSGQCENFQDFGMSYASSSMDRPFSHTSSIAESLLSGGR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01035 625 PANTHER - 33 572 - -
Vifa5g01035 625 Gene3D Phosphorylase Kinase; domain 1 281 372 - -
Vifa5g01035 625 Gene3D Transferase(Phosphotransferase) domain 1 373 578 - -
Vifa5g01035 625 Pfam Legume lectin domain 26 249 IPR001220 GO:0030246
Vifa5g01035 625 SMART serkin_6 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01035 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vifa5g01035 625 SUPERFAMILY Protein kinase-like (PK-like) 278 579 IPR011009 -
Vifa5g01035 625 Pfam Protein kinase domain 296 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01035 625 Gene3D - 24 271 - -
Vifa5g01035 625 CDD lectin_legume_LecRK_Arcelin_ConA 26 247 IPR001220 GO:0030246
Vifa5g01035 625 FunFam L-type lectin-domain containing receptor kinase S.4 373 579 - -
Vifa5g01035 625 ProSiteProfiles Protein kinase domain profile. 296 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01035 625 ProSitePatterns Protein kinases ATP-binding region signature. 302 325 IPR017441 GO:0005524
Vifa5g01035 625 CDD STKc_IRAK 302 569 - -
Vifa5g01035 625 FunFam Lectin-domain containing receptor kinase A4.3 281 372 - -
Vifa5g01035 625 FunFam L-type lectin-domain containing receptor kinase V.9 25 261 - -
Vifa5g01035 625 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 261 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01035 Vifa-Chr5 304841076 304843109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01035 21 625 Receptor kinase-like Gene Family AT2G37710 59.242 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa5g01035 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01035 - - mtr:25498550 1095.49