Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01032 ATGTCTCTCCAACTTCTATTGGTGTTGTTTTTTCTTGTTACAGTTGTAGCAAGTAAAGATGTTAGTTTCATTTATAACAATGGATTCCAATCCTCTCATTTGCATCTTGATGGTATTGCTGAGTTAACCTCTAATGGCATACTAAGACTCACCAATGACACCAAACAAAAAAAAGCACATGCTTTTTATCCAAATCCTATACTTTTCAAAAACACTTCCACTGGAAGTGTTTCTTCTTTCTCAACCACTTTTGTGTTTGCCATAAGACCTCAGTATGCAACTCTTAGTGGTCATGGAATTGTCTTTGTTGTTTCTCCAACAAAAGGGTTGCCAAATTCACTAGCAAGTCAGTACCTTGGTCTCTTTGATAAATCCAACAATGGAAACAGTAGTAACCATGTTTTTGGGGTGGAACTTGACACTATTTTAAACAGTGAGTTTGGTGATATCAATGATAACCATGTTGGTATTGATATCAATGATTTGAAATCAGCTAACTCAACTCCTGCAGGATATTATGATAGTAATGGTCAACGGAAGAATTTGACTCTTTTCAGTGGCTATCCTATGCAGGTTTGGATTGAATATGATGGTGAGAAGAAGAAGAAGATTGATGTTACTTTAGCTCCTATTGATGTTGTTAAACCAAAACAACCGTTGTTGTCATTTATCAAAGATCTTTCTCCAATTCTTAATAATAGTATGTACGTTGGATTTTCATCAGCTACTGGATCTGTTTTTACTTCTCATTATATTCTTGGTTGGAGTTTTAAGGTTAATGGTCAAGCTCAAAGCCTTGTGATTTCTGAACTTCCTAAGCTACCAAGATTTGGTGACAAAAAAGATTCTAAATTTTTGACTGTTGGGTTACCTTTGCTTTTGCTAAGTTTGGTTTTCATGATAACTTTAGGGGTTATTTATTATATAAAAAGGAGGAAGAAATTTGCTGAGTTGCTTGAAGATTGGGAGCATGAATATGGCCCACATAGATTTAAGTTCAAAGATCTATACTTTGCCACAAAGGGTTTCAGGGAGAAGGGGCTATTGGGAGTTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAGGATCCAAACTTGAGGTTGCTGTGAAGAGGGTGTCTCATGAATCAAGACAAGGGATGAGGGAATTTGTGTCGGAAATTGTTAGTATCGGTCGTCTTCGTCACAGGAATCTTGTTCCGCTTCTCGGTTATTGTAGGCGAAAAGGCGAGTTACTTCTTGTCTATGATTACATGTCTAATGGAAGCTTAGACAACTACTTACACAACCAACCAAGAGTGAGCTTGAATTGGAGTCAAAGGTTTAGAATCCTCAAAGGGGTTGCTTCTGGTTTGTTTTATCTACACGAAGGATGGGAGCAAGTTGTGATTCATAGAGACATAAAAGCTAGTAATGTGTTATTAGATGGTGAAATGAATGGTAGGTTGGGAGATTTTGGTCTTGCAAGGTTGTATGATCATGGTGCTGATCCTCACACAACTCATTTGGTTGGGACTGTAGGGTATCTTGCTCCTGAGCATACTAGAACAGGTAAAGCTACTAAATTTTCTGATGTGTTTGCTTTTGGTGCATTTCTTCTTGAAGTTGTTTGTGGCAGGAGGCCTATAGAACATGCAGGAGAAAATGAGAGTGTAATTCTTGTTGATTATGTGTTTGAGTGTTGGAAAAAAGGTGATATTCTTGATGCAAAAGATGTAAGTTTGGGATTATATTATGTGTCTCAAGAGGTTGAGTTGGTGTTGAAACTTGGCTTGTTGTGCTCACATTCAGAACCTGTGGCTAGACCAAGTATGAGACAAGTTGTGCAGTATTTGGAGATGGATATACCTTTGCCTGATTTGTCTTTGCTTAGTTTATCTTCTTCTGGATTAACTTTTGGGTACCAAGAACATTTTGAGGATTTTCCAATGTCTTATCCATCTTCTATGGACAAGACAATGTCACATACTTCTATGTCTATAGCCGAATCTCATCTCTCCGGTGGTCGTTGA 2016 0.378 MSLQLLLVLFFLVTVVASKDVSFIYNNGFQSSHLHLDGIAELTSNGILRLTNDTKQKKAHAFYPNPILFKNTSTGSVSSFSTTFVFAIRPQYATLSGHGIVFVVSPTKGLPNSLASQYLGLFDKSNNGNSSNHVFGVELDTILNSEFGDINDNHVGIDINDLKSANSTPAGYYDSNGQRKNLTLFSGYPMQVWIEYDGEKKKKIDVTLAPIDVVKPKQPLLSFIKDLSPILNNSMYVGFSSATGSVFTSHYILGWSFKVNGQAQSLVISELPKLPRFGDKKDSKFLTVGLPLLLLSLVFMITLGVIYYIKRRKKFAELLEDWEHEYGPHRFKFKDLYFATKGFREKGLLGVGGFGRVYKGVMPGSKLEVAVKRVSHESRQGMREFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMSNGSLDNYLHNQPRVSLNWSQRFRILKGVASGLFYLHEGWEQVVIHRDIKASNVLLDGEMNGRLGDFGLARLYDHGADPHTTHLVGTVGYLAPEHTRTGKATKFSDVFAFGAFLLEVVCGRRPIEHAGENESVILVDYVFECWKKGDILDAKDVSLGLYYVSQEVELVLKLGLLCSHSEPVARPSMRQVVQYLEMDIPLPDLSLLSLSSSGLTFGYQEHFEDFPMSYPSSMDKTMSHTSMSIAESHLSGGR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01032 671 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Vifa5g01032 671 Pfam Protein kinase domain 344 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01032 671 Gene3D Transferase(Phosphotransferase) domain 1 420 617 - -
Vifa5g01032 671 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Vifa5g01032 671 Pfam Legume lectin domain 21 271 IPR001220 GO:0030246
Vifa5g01032 671 CDD STKc_IRAK 349 614 - -
Vifa5g01032 671 ProSiteProfiles Protein kinase domain profile. 343 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01032 671 SUPERFAMILY Protein kinase-like (PK-like) 318 615 IPR011009 -
Vifa5g01032 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vifa5g01032 671 PANTHER - 15 617 - -
Vifa5g01032 671 Gene3D - 19 271 - -
Vifa5g01032 671 CDD lectin_legume_LecRK_Arcelin_ConA 21 261 IPR001220 GO:0030246
Vifa5g01032 671 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Vifa5g01032 671 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01032 671 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Vifa5g01032 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 279 IPR013320 -
Vifa5g01032 671 FunFam L-type lectin-domain containing receptor kinase V.9 20 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01032 Vifa-Chr5 304457219 304459234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01032 17 671 Receptor kinase-like Gene Family AT2G37710 65.906 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa5g01032 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01032 - - mtr:25498550 983.015