Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01016 ATGGAAGAAGCTACTTCAATAACAGAACTGTTGAAGGGCTTTTGTGATACTATGCCATGGCAGTATGCTGTCTTTTGGAAGCTTATCCATCTTTCTCCAATGACATTGAACTGGGAAAGTGGTTATCAGAAAAGTAATGAGCCTTTGGGGAGTATGTGGGGGGACATCAATTTCGAATCCACTGACGATGTATATTCTTCAAGGAGCGAAGGAACTGATGATGTAGGTGATTATTCAGTCCGACTTCTCATGATCGAAATGTCTCATCGTAAATACACTTTGGGAGAAGGGGTCATTGGTAAATTAGCTCTTACCAAGGAACACTTTTGGGTTTCCAGCGACGACATTTTTGCCGGTAAATTTGACACTAGTTTGCTTCCTGAGTGTCCCGATGAATGGCTTCTTCAGTTTGCATCTGGCATCAAGACTATTGTGCTGGTTCCAGTTCTTCCACAAGGGGTTTTGCAGTTCGGTTCATTTAAAGCGGTTGCTGAAGATCGAGAATTTGTAGCGAATATCAAAGAGAAATTTCATTTCATTCAATGTATGGAAGCTAATGCCACAGCTTTGAACTATGGAATCGATTCTCAAGATTGGTCATTCTCGGATCTATCAAATTATTTGATGGATAGCATCGACGAATCTTCTGCAGTCAGTACTTCTCTCAATATGAATGAATCGGCTAGATTTCCTCAGGAAGTGTATTTGTTCTCTAGAGAAACTCAGCTAAAATCTCTCAAAAGAGCAAGTGAAAATCAGATGTTTTCCTCATCATTCAAGACGCCAACTGATCCAACACATATTGGTTATGAGGAGACAAAATCGAATCATCTGGTTGAAGAGATATGGCCCTGGTCTCACTTTGTTGGCAATGAAGAAAAGTTCGGAGAGACATCGTATGGATTAAGTTCTTATTCTGATAATAATATGACTGGTCATGTTAATGTTAAGAATTTCCATGACTTCTCCTCCCTTCCCTCGGTGTCTGTATTCGACAAAGCAGTTGAGTCTGTTGCAGATAGACAGACAGGAAAATGTATACCGAAATATATCTTGAACGAGGATACATTCAGTAGCTCGACTTTAATATCCAATAAAAAGGAGCATGATCATATCAAGAGTTTCGAGCTTCCTGAAGGAATTGAACCGGAATATCTTTTGGATGCTGTTGTTGGCGATTTATGCAGTGCCTCTGATGATACCTCGTGCAGATCCAACAGTTTTAGGTCTCATATAACAATGCCATCAGAGTTTACTAACTCCATTCAGCCGAAAATTGTATCCGAAGAAAGCACTGCGTTTGTGAAAAACTCAGATGTTGGAAGTGGTCTTGTCCCTGCGGTTACGACCAACGCAAAAGACGTATTTATGAATCATTTTATATCATCCCTCGATGGAAATTCAAGTTTATTGGTTGATGAGGCACCACGGGAACAAGTTAATAATCATGTTGTGCCCATTAGTCGACCAAAGCTCTCTAGTGTGAGCAAGAAAAAAGCAAAAGTAGGCAATAAAAAAAATTCAAGGCCAAGAGATAGACAGTTGATCATGGACAGGATGAAGGAGTTGAGGGAGCTCATCCCAGATGGCGGAAGGTGTAGCATTGACAACCTTTTGGAACGAACCGTAAAGCACATGATGTACTTAAGAATGGTAACTAGCCATGCCGAGAAACTGAAAAGATTTGCTGATCGTGAGGTACCTGAAAGGAAAAGGCAGAAAACAAATGGCAGCCGTCCAGGAAGAAGCTGTGCATTTGACTTAGAAAGTGAACAATCATGGCCAATAGTCATAGAAGATCTGGAATCCTCCGGGCACATGCTCATCGAGATGGTATGCAATGAGCATGGACTTTTCTTGGAGATTGCTCAGGTGATCCGAAGGCTGGACATTACCATCTTGAAAGGGATTTTAGAAAACCGTTCGAGCACAAGCTGGGCTTGTTTCATCGTCGAGGTTCCAAGAGGTTTTCACAGGATGGATATTTTATGTCCTTTACTGCATCTTTTGCAGCTTAGGAGAAACTGTGTTTCATAA 2037 0.4109 MEEATSITELLKGFCDTMPWQYAVFWKLIHLSPMTLNWESGYQKSNEPLGSMWGDINFESTDDVYSSRSEGTDDVGDYSVRLLMIEMSHRKYTLGEGVIGKLALTKEHFWVSSDDIFAGKFDTSLLPECPDEWLLQFASGIKTIVLVPVLPQGVLQFGSFKAVAEDREFVANIKEKFHFIQCMEANATALNYGIDSQDWSFSDLSNYLMDSIDESSAVSTSLNMNESARFPQEVYLFSRETQLKSLKRASENQMFSSSFKTPTDPTHIGYEETKSNHLVEEIWPWSHFVGNEEKFGETSYGLSSYSDNNMTGHVNVKNFHDFSSLPSVSVFDKAVESVADRQTGKCIPKYILNEDTFSSSTLISNKKEHDHIKSFELPEGIEPEYLLDAVVGDLCSASDDTSCRSNSFRSHITMPSEFTNSIQPKIVSEESTAFVKNSDVGSGLVPAVTTNAKDVFMNHFISSLDGNSSLLVDEAPREQVNNHVVPISRPKLSSVSKKKAKVGNKKNSRPRDRQLIMDRMKELRELIPDGGRCSIDNLLERTVKHMMYLRMVTSHAEKLKRFADREVPERKRQKTNGSRPGRSCAFDLESEQSWPIVIEDLESSGHMLIEMVCNEHGLFLEIAQVIRRLDITILKGILENRSSTSWACFIVEVPRGFHRMDILCPLLHLLQLRRNCVS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01016 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 500 549 IPR011598 GO:0046983
Vifa5g01016 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 177 IPR025610 -
Vifa5g01016 678 MobiDBLite consensus disorder prediction 491 511 - -
Vifa5g01016 678 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 342 675 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01016 Vifa-Chr5 301259478 301263152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01016 7 676 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 28.489 2.28e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01016 - - gmx:100820605 824.313