Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01011 ATGATGTTGAATTCTGGTGGAGGAGAAGATGAACTGTATGAACAATTATGGAAGGCTTGTGCAGGACCTCATGTTGAAGTTCCTCGTGCTGGACAAAGGGTGTTCTATTTTCCTCAAGGGCACATGGAACAATTAGAAGTATCAACAAATCAGGAACTCAATCAGAGGATTCCTTTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAGCAAGAGACAGATGAGGTTTATGCACAGATAACTTTGGTACCGGAATCTAATCAAACTGAGCCTACGAGCCTTGATCCTTGTCCTGCTGAACCTCCAAAACCGAGAACTCACTCCTTCAGCAAGGTCTTAACTAACTCTGATACCAGTACTCATGGTGGTTTTTCTGTTCTTAGGAAGCACGCCACAGAATGTCTTCCGTCGTTGGATATGTCCCAATCTACTCCAACTCAGGAATTGGTTGCTCGAGATCTTCACAATTATGAATGGCACTTTAAGCATATCTTTAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTCGCTGGAGATACCTTTGTGTTTCTGCGAGGGGACAACGGGGAATTACGCGTTGGAGTGAGGCATCTTGCGTCTCCTCAGAGCTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACATTGGTGTCCTTGCAACTGCGTCACACGCCGCTGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCAAGGATGAGCCAGTTCATTATAAGTGTGAATAAGTATATGGAAGCTATGAACCAGAAATGTAGTGTTGGCATGAGGTTCAAGATGAATTTTGATGGGGATGATGCCCCCGAAACCGACAAAAGATTTTCTGGCACAATAATTGGACAAGAGGATATATCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCACTTATGGCTTCTGTTCCTTCATCTGTGCAACCTGCAGCTGTAAAATATAAAAGGCCTAGACTACCGAGTGAAGTTCCGGATCTTGGAGACGCGACATTATGTGATTCTACTTACTGGGAACCCGGGTTGACACAATCAGACGTAACGCAAGTTAACATTATGTCTGAAACCAAAAGGCCTGAAAGTATGCATATGTGGAATCATCATAAGCAAAATGATAATAGCAGCTGCAACAGTATATCAAGGAATCCGACAGACGGAAGTTGGCTATCGTCTCCTCACTCTAGTGTTCCTTCTCATTTGTGTCAGGACACGACCGACACTAGCAAGAGTGTCACTATCTCAGCTTGGCCTAATTTAAAAACTTACTCAGAAATATTGAACAAAAATGATAATTTGATTGACCAAGTTGACAAGGAGAACAAAATAGAAACTGCTCCAAGCTGTAGATTGTTCGGGATTGATCTTAATGATCCTCGCACAAATTCTACGAATGCATCTGGAGTCACCTCTGAGAGATGCGTTGTCACTCCCGTGTCAAGAACTGATGCAGACCAAAATAAATTTGATATCTCAAAGACTTTAAAAGAAAGGAAACAAGAACCATCTCCGAACGAAACACTAAGCAAGCAAATCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGCTGCAGTGGGTCGTGCGGTATACTTGACTGCGTTGGGTGGGTATGATCAACTTATCGATGAATTGGAGAAGCTGTTTGACATAAAGGGACAGCTTCAACCTAGGAATAAGTGGGAAATCGTCTTCACCGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCGTGGCCGGAATTCTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATATGCACAAAATGAGCTCAGGGACCAAATTACCAATCTCATCAATGGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 2016 0.4281 MMLNSGGGEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPKPRTHSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRHLASPQSCMPSSVISGQSMHIGVLATASHAAATQTLFVVYYKPRMSQFIISVNKYMEAMNQKCSVGMRFKMNFDGDDAPETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDEPASIPRPDRISPWEIEPLMASVPSSVQPAAVKYKRPRLPSEVPDLGDATLCDSTYWEPGLTQSDVTQVNIMSETKRPESMHMWNHHKQNDNSSCNSISRNPTDGSWLSSPHSSVPSHLCQDTTDTSKSVTISAWPNLKTYSEILNKNDNLIDQVDKENKIETAPSCRLFGIDLNDPRTNSTNASGVTSERCVVTPVSRTDADQNKFDISKTLKERKQEPSPNETLSKQINSRSCTKVQMQGAAVGRAVYLTALGGYDQLIDELEKLFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDMHKMSSGTKLPISSMEETVISSDTAET 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01011 671 Gene3D - 557 649 - -
Vifa5g01011 671 Gene3D - 114 218 IPR015300 -
Vifa5g01011 671 MobiDBLite consensus disorder prediction 417 451 - -
Vifa5g01011 671 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g01011 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g01011 671 FunFam Auxin response factor 115 219 - -
Vifa5g01011 671 MobiDBLite consensus disorder prediction 95 122 - -
Vifa5g01011 671 CDD B3_DNA 115 216 IPR003340 GO:0003677
Vifa5g01011 671 Gene3D - 278 352 - -
Vifa5g01011 671 ProSiteProfiles PB1 domain profile. 561 642 IPR000270 GO:0005515
Vifa5g01011 671 FunFam Auxin response factor 556 649 - -
Vifa5g01011 671 SUPERFAMILY DNA-binding pseudobarrel domain 104 246 IPR015300 -
Vifa5g01011 671 Pfam AUX/IAA family 543 646 IPR033389 -
Vifa5g01011 671 SMART B3_2 117 219 IPR003340 GO:0003677
Vifa5g01011 671 Pfam B3 DNA binding domain 117 216 IPR003340 GO:0003677
Vifa5g01011 671 FunFam Auxin response factor 278 351 - -
Vifa5g01011 671 SUPERFAMILY CAD & PB1 domains 557 637 - -
Vifa5g01011 671 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01011 Vifa-Chr5 300338779 300342699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01011 2 654 B3 DNA Binding Superfamily AT4G23980 57.335 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g01011 AUX_IAA 4.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01011 K14486 - gmx:100799088 966.066