Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01008 ATGCCAGGAGGTAAAATGAAGTTTGATGAGGATCTTGGTCCTGACCGTGAGGATGATTTTCAAACAGATGATGAAGAAAATCAAGCTGAAAGGGTTTTTGATAATTTGGATGATGATACCGAATCAGATAACAATAATCCACCTTCAGAAAATTTGTCCTTCAATGAGGTTGACTTTAATACCTCATGGCCTCAAACCTATAGGACATCTATGGACATGTTAACAAGTGTAAGTAAAACACCACCTGGGATTAATTTCTTCAAGATAATTGGTTCAACAGGGAAGATTAGTGTCCCTAAGGAAAGCATCCAAGATGAATCTACCAATTCTTTGACTTTACCGCTTGTTTCGGAGGAGAAAACTTCAATTGGAAAAGAGGAACCTACATCGAAACCTCAACTTCGATCACATGTCAGCTGTCCAAAAGTTTCTGCCACTGAATTTTCATCACCTGAGAGGCAAAGTTCCTTTGCACAATCAGTGACTAATGGGACCAATATATTATGTGGGATCGGACTTATGACCATTCCGTATGCTGTAAAAGAAGGAGGATGGTTGAGCCTTGTAATACTGATATTGTTTGCTCTCACTTGTTGCTATACTGGAATTTTATTGATGAGATGTTTACAAAGCCGTCCTGAACTCAACACCTATCCAGATATTGGCCAGGCTGCTTTTGGAATTGCAGGTCGCTTGGGGATCGCGATCATTTTATACATGGAACTATTTGGTTCTTGTGTTGAGTATATAACACTTGTCAGTGATAACCTCACATCACTTTTCCCCGACACCAGCATGAACTTAGCTGGTACAGAGCTTAGTACAAATCAAGTTTTTTCCATCACTGCAGCTCTTCTAGTTTTACCGACAGTTTGGTTGCGAGATTTAAGCCTGCTTTCATATATTTCAGTTGGAGGAATATTTGCAACAACACTTGTAGCACTTTGCTTGTTTTGGGCTGGTGCAGTAAACCAAGTTGGATTTATCAATCCAAGAATGAAAATTTTAGACATTGAAAACATATCTGTATCAATTGGTCTCTTTGGTTTCGGATTTGCTGGCCATGCTGTTTTTCCAAATGTCTACTCTTCCATGAAGGATCAATCCAAATTCCCATTAGTTCTATATATCAGTTTTGTTTTCTGTCTTGTGATGTACGTTAGTGTAGGAGTAGTTGGATATTTACTGTTTGGTGACAGAGTTCAATCTCAGTTTACCTTAAACATGCCAAAAGAGTTATATGCATCAAAGATAGCAATCTGGACAACTGTTGTGACTCCTCTAGCGAAATATGCTTTAACATTATTGCCTATTGTATCAAGCATAGAGGAACTTGTTCCTTCTCCTAGACTAAGATGTTATGCTATGTCTATTGTTATCAGAACATCTTTAGTTCTTGCAAGTTTAGCTGTGGCTCTCTCTTTTCCATATTTTGGTTCTGTGATGGCACTAATTGGTGCTATGTTGTCAATGATAGTTGCACTTATTTATCCTTGTGCATGTTATCTTAAGCTACACAGTGGCAGATTATCAAATATGCAGATAACAACTTGCATTTTGGTTATTATTGTGGGGATGATAAGCGCTATCATAGGAACATACTCAGCTACTACAAGAATAGCTGGCAAGGGAGACTAA 1638 0.3828 MPGGKMKFDEDLGPDREDDFQTDDEENQAERVFDNLDDDTESDNNNPPSENLSFNEVDFNTSWPQTYRTSMDMLTSVSKTPPGINFFKIIGSTGKISVPKESIQDESTNSLTLPLVSEEKTSIGKEEPTSKPQLRSHVSCPKVSATEFSSPERQSSFAQSVTNGTNILCGIGLMTIPYAVKEGGWLSLVILILFALTCCYTGILLMRCLQSRPELNTYPDIGQAAFGIAGRLGIAIILYMELFGSCVEYITLVSDNLTSLFPDTSMNLAGTELSTNQVFSITAALLVLPTVWLRDLSLLSYISVGGIFATTLVALCLFWAGAVNQVGFINPRMKILDIENISVSIGLFGFGFAGHAVFPNVYSSMKDQSKFPLVLYISFVFCLVMYVSVGVVGYLLFGDRVQSQFTLNMPKELYASKIAIWTTVVTPLAKYALTLLPIVSSIEELVPSPRLRCYAMSIVIRTSLVLASLAVALSFPYFGSVMALIGAMLSMIVALIYPCACYLKLHSGRLSNMQITTCILVIIVGMISAIIGTYSATTRIAGKGD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01008 545 Pfam Transmembrane amino acid transporter protein 154 535 IPR013057 -
Vifa5g01008 545 MobiDBLite consensus disorder prediction 1 57 - -
Vifa5g01008 545 FunFam Amino acid transporter AVT1A 153 543 - -
Vifa5g01008 545 PANTHER OS05G0424000 PROTEIN-RELATED 159 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01008 Vifa-Chr5 298866660 298870169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01008 6 543 Amino Acid or Auxin Permease AAAP Family AT5G02180 49.729 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01008 K15015 - pop:7468814 587.415