Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01001 ATGGAGAAAGTTATGAGTTCTAATTGGTCAGAACAAGGGTCAGAAGATGATGAACTTTTAAGGGAGCTTTTAGATGATGAAACTCCTCTTTTTATGTTGCCACAAGAGAGAGTAAATGAAGTAAGCAACTATACAAGTCATGATTCTTCAAAAGACCAGCCTTTTAATAGGCTCATTTCAAATATTTATTCAGGTCCTACTATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGAGAGCATTTTCCACAAATTTCATCAAGAGTTTCTATACTGGAAAGAAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATTAAATGCTTTGGAAATGGAATGGGTGATGATGGATATAGGTGGAGAAAGTATGGTCAAAAGTCCATAAAGAATAGCCCAAATCCTAGGAGCTACTATAGGTGCACCAACCCAAGATGTAGTGCTAAGAAGCAAGTTGAAAGATCCAATGAAGACCCTGACAGTCTTATAATCACTTATGAAGGGCTTCACTTACACTTTACTTATCCTTATTTCCTAGTGGGCCAATCACATCAATCTAGTTCTCATCCACCAATCAAGAAGCCCAAGCCCACCTCTTCACAAGGCCCAACACAAGCCCATAAAGGAAACAATGTTCATGAAAGCCAGAATATACAAGAAGTCCATGAAGCCCAAGCTAGTGCTTCTTTGGGACTCATATCACCCACTTTATTGGACTCTACACAAGATTTGGTCCAAGAAAATTTGGGATCACAAGGTTCTGGTTGTTCCACTTCCACCTCTTGTTATGCTGTTGGCTTAAATCCAAGTGTTTAG 822 0.3783 MEKVMSSNWSEQGSEDDELLRELLDDETPLFMLPQERVNEVSNYTSHDSSKDQPFNRLISNIYSGPTISDIENALLVTNHREHFPQISSRVSILERSLSKIENKYTLKIKCFGNGMGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDSLIITYEGLHLHFTYPYFLVGQSHQSSSHPPIKKPKPTSSQGPTQAHKGNNVHESQNIQEVHEAQASASLGLISPTLLDSTQDLVQENLGSQGSGCSTSTSCYAVGLNPSV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01001 273 ProSiteProfiles WRKY domain profile. 112 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01001 273 MobiDBLite consensus disorder prediction 186 212 - -
Vifa5g01001 273 SUPERFAMILY WRKY DNA-binding domain 115 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01001 273 Gene3D WRKY domain 113 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01001 273 Pfam WRKY DNA -binding domain 118 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01001 273 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 209 IPR044810 GO:0003700
Vifa5g01001 273 SMART WRKY_cls 117 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01001 273 FunFam WRKY transcription factor 103 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01001 Vifa-Chr5 298215606 298216902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01001 27 187 WRKY Transcription Factor Family AT5G43290 54.491 1.69e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01001 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01001 - - tpra:123889134 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01001 5 298215606 298216902 Vifa5g01001 5 298215606 298216902 ECH