Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00997 ATGATGGATCCACATCTCAATGGGTTTTGTGGTTCCACGAATGAGATCCGGTTTGGGAATCAATCTTTTCCGGTTATTCAGAATCAGAGATTTGAATTTGGTTCCAATTTGGCAGCGGCTGATTGTACGCCTTCTTCGACAATAACCTCGGTTTCGACGCACGAGGAACCGTCTCCTGAGGACTGTGAGTTTTCTGATGCTGTTTTGAATTACATTAATAACATCCTTATGGAAGAAGATATGGAAGATAAAACATGTATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCATTCTATGAAGTAATAGGCGAAAAGTACCCGGTTTCGGTTTCGCCATTAGGACTACTTACAAGTGTTTGTAATCAAAATGAGTATGTTGGAGATAGTAACTTCTTTGATGATTATGGTACTTGTGTTGATGATGGTGATCTTAGTTGCATTTTTACAAAGAATTCTTTTCGTGGAAACTCGAGGGAAATTCAGTTTCCTCAACCAGATTTTCAAGGAAATAGTGTTTCACAATCATCTCATAGCTCTACAAATAGCGTAAAAAGTACTGTGGAAGGGCTTTTGGATTCTCCAGATAGTATTTTACATGTTTCGGATCAGATTAGCGGGAGTCAACCGATTTTGCAATTTCAAAAGGGCGTTGAGGAGGCTAATAAGTTTCTCCCAAGTGGAAATGGCCTCTTTCAAAATTTTGACGGTTCTAAGTTTTCGATACTAGAGCCTGAAGCGGTGAGAGATGAATTATCAGTTAAGGTGGAGAAGGGTGAGAGAGAGTCCTTTCTTTCTAAGGGAAGGAAGCATCATTACGACAATGAGGGAGACGTCGAAGAAAACAGAAGCAGCAAGCAAGCGGCGATTTACTCGGATCCTATGTTGAGGTCAAATCTGGCCGATGCGATCCTGCTTCATAGTTTAGGAGATGGTAAGAAGCATTTTACGGCTCGTCGCGAGGCCTTGCAAACTAAGAACAATATGGTGCCAAGTAATAAATCGAAAGCTCGTACTAGTGGAAAAGGACGAGGTAAAGGTAAAAAACAAAACGGAAAAAAGGAAGTGATTGATTTGAGAACACTGCTTGTTCTTTGTGCACAGGCTGTTGCAGCAGACGATCATAAAAGTGCGCACGAATTGCTAAAGCATATCAGGCAACACTCGAACCCTTTCGGAGATGGAAATCAGCGGTTGGCTCATATATTTGCCGATGGCCTCGAGGCACGTTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTAATCAGTAAAAGAACATCTGCTGCCAATTATCTGAAAGCTTATCATCTATACCTTGCTGCTTGCCCTTTTCGAAAGATGACTAGTTTCGTCTCAAATGTTACTATAATGAACTGTTCGGCAAGTTCAACGAGGGTCCATATTGTAGACTTTGGCATCCTCTATGGTTTCCAATGGCCTACCTTTATACAAAGACTTTCGTTACGATTGGGAGGACCACCAAAGCTTCGGATTACAGGAATAGACTTTCCACAACCCGGTTTCAGGCCCGCAGAGAGAATTATAGAGACCGGAAAGCGCTTGGCAGCATATGCTGAAACTTTTAAAGTGCCATTTGAGTACAATGCCATAGCGAAAAAGTGGGAGACCATTCAGTTCGAGGAACTCAAGATCGACAAAGACGAATACCTTGTTGTTACCTGTTTTTATCGCGGTAAAAACTTGCTGGATGAATCCGTCGTAGTAGACAGTCCAAGGAACAAATTCCTCAATTTGATAAGGAGGATCAAACCTGATATATTCATTCACGGCATTACGAACGGAGCCTTTAATGCGCCATTCTTTGTTACTCGGTTTAGAGAGGCGTTATTTCACTTCTCTTCACTTTTCGATATGCTCGAAAGTATTGTGCCTCGCGAGGATTGGGAAAGGATGCTAATTGAGAAAGAGATATTTGGGAAGGAAGCATTGAATGTTACAGCTTGTGAAGGTTGTGAGAGAGTAGAGAGACCAGAGACATATAGGCAGTGGCAAGTTCGTATTCTCCGAGCCGGGTTTTCACAACTAACTTTCAGCAAAAACACGGTAGAAAGGGCAGTGCAGAAAGTAAGAACTAGCTACCACAAAGATTTTGTAATCGACGAAGATAGCAAGTGGCTATTGCAAGGTTGGAAAGGGCGAATCGTGTACGCGCTTTCGTGTTGGAAACCTGCTTGA 2205 0.4195 MMDPHLNGFCGSTNEIRFGNQSFPVIQNQRFEFGSNLAAADCTPSSTITSVSTHEEPSPEDCEFSDAVLNYINNILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPVSVSPLGLLTSVCNQNEYVGDSNFFDDYGTCVDDGDLSCIFTKNSFRGNSREIQFPQPDFQGNSVSQSSHSSTNSVKSTVEGLLDSPDSILHVSDQISGSQPILQFQKGVEEANKFLPSGNGLFQNFDGSKFSILEPEAVRDELSVKVEKGERESFLSKGRKHHYDNEGDVEENRSSKQAAIYSDPMLRSNLADAILLHSLGDGKKHFTARREALQTKNNMVPSNKSKARTSGKGRGKGKKQNGKKEVIDLRTLLVLCAQAVAADDHKSAHELLKHIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTSAANYLKAYHLYLAACPFRKMTSFVSNVTIMNCSASSTRVHIVDFGILYGFQWPTFIQRLSLRLGGPPKLRITGIDFPQPGFRPAERIIETGKRLAAYAETFKVPFEYNAIAKKWETIQFEELKIDKDEYLVVTCFYRGKNLLDESVVVDSPRNKFLNLIRRIKPDIFIHGITNGAFNAPFFVTRFREALFHFSSLFDMLESIVPREDWERMLIEKEIFGKEALNVTACEGCERVERPETYRQWQVRILRAGFSQLTFSKNTVERAVQKVRTSYHKDFVIDEDSKWLLQGWKGRIVYALSCWKPA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00997 734 ProSiteProfiles GRAS family profile. 352 732 IPR005202 -
Vifa5g00997 734 MobiDBLite consensus disorder prediction 265 286 - -
Vifa5g00997 734 Pfam GRAS domain family 361 732 IPR005202 -
Vifa5g00997 734 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 286 725 IPR005202 -
Vifa5g00997 734 MobiDBLite consensus disorder prediction 167 187 - -
Vifa5g00997 734 MobiDBLite consensus disorder prediction 328 354 - -
Vifa5g00997 734 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00997 Vifa-Chr5 296756076 296758280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00997 60 733 GRAS Transcription Factor Family AT2G37650 51.594 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa5g00997 GRAS 7.6e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00997 - - gmx:100801824 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00997 5 296756076 296758280 Vifa5g00997 5 296756076 296758280 ECH