Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00986 ATGCACTTGGAAATGAAGGATAGGCAGCGGTGGAGAGCGGAAGAGGATTCGTTACTACGCGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAACCTCGTGTCTCAGCGCATGAACACACCTCTTAACAGGGACGCAAAATCGTGTTTAGAACGGTGGAAGAATTACCTTAAGCCGGGTATTAAGAAAGGATCTTTAACTGAGGAAGAGCAGCACCTTGTCATTAGTCTTCAAGCAACGCACGGAAACAAATGGAAGAAAATCGCTGCACAAGTCCCTGGTCGCACTGCTAAGAGATTAGGTAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAAAGAGAAACAAAAGGGATAAACAAAACCGTCGATCCAATCAACGATAGCAAGTACGAACATATACTCGAAAGTTTCGCCGAGAAACTAGTGAAAGAGAGGCCTTCGCCTTCATTTGTCATGGCTGCTTCAAACAGTTCTTATCTTCATACCGATGCACAAACAGCAACACCGGGATTGCTTCCTTCATGGCTTTCGAATTCCAACAATACAGCACCTGTTAGGCCGAATTCTCCTTCAGTGACATTAAGCCTCTCTCCCTCAACAGTTGCAGCACCTCCTCCGTGGATGCAGCCTGTACGAGGACCGGACAATGCGCCTCTTGTTCTTGGGAATGTTGCTCCTCACGGCGCGGTTCTGTCTTATGGCGAAAACATGGTGATGTCTGAGTTAGTAGATTGCTGTAAGGAGTTGGAAGAAGGTTATCATGCATTGGCAGCGCATAAGAAAGAGGCAGCATGGAGGTTAAGCCGAGTTGAGCTGCAGTTGGAGTCGGAGAAAGCAAGTCGAAGGAGGGAGAAGATGGAGGAAATCGAAGCGAAGATAAAAGCTTTGAGGGAGGAACAAGCGGTCGCTTTGGATAGAATCGAAGGAGAGTATAGAGAACAGTTAGCAGGGTTGAGAAGAGACGCAGAGACGAAAGAGCAGAAATTGGCTGAACAATGGGCTGCGAAGCATTTGCGCCTTACAAAGTTTCTAGAACAGGTAGGGTGTAGATCAAGGCATGCTGAACAAAATGGAAGATGA 1080 0.4694 MHLEMKDRQRWRAEEDSLLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGINKTVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAQTATPGLLPSWLSNSNNTAPVRPNSPSVTLSLSPSTVAAPPPWMQPVRGPDNAPLVLGNVAPHGAVLSYGENMVMSELVDCCKELEEGYHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAVALDRIEGEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRSRHAEQNGR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00986 359 Gene3D - 66 130 - -
Vifa5g00986 359 CDD SANT 10 57 IPR001005 -
Vifa5g00986 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vifa5g00986 359 Coils Coil 308 328 - -
Vifa5g00986 359 FunFam MYB-related transcription factor 8 62 - -
Vifa5g00986 359 SUPERFAMILY Homeodomain-like 8 102 IPR009057 -
Vifa5g00986 359 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Vifa5g00986 359 Pfam Myb-like DNA-binding domain 11 72 - -
Vifa5g00986 359 Gene3D - 8 62 - -
Vifa5g00986 359 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 356 - -
Vifa5g00986 359 CDD SANT 67 108 IPR001005 -
Vifa5g00986 359 Coils Coil 269 306 - -
Vifa5g00986 359 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vifa5g00986 359 SMART sant 62 110 IPR001005 -
Vifa5g00986 359 SMART sant 7 59 IPR001005 -
Vifa5g00986 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00986 Vifa-Chr5 292949705 292950784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00986 5 350 MYB Transcription Factor Family AT2G37630 66.393 3.08e-160 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g00986 Myb_DNA-bind_6 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00986 K09422 - gmx:100819082 622.468