Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00985 ATGGCTGAGGTGAAATCAGAGGAGTATTGTTTGGAGAATAAGCAATCAACTGTTGCTTCTTGCTCCTCTGCGTCTGAAGGTAGTGGCAGTGTAGTTCATAAGTCTCCGGGGATATGTAGCCCGCCGTCGCCCTCACATCGGAGGACAACCGGTCCTATAAGGCGTGCTAAAGGTGGTTGGACAGCAGAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAATGGAAAGCATTGGAAGAAAATAGCCGAGTTTTTTCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAGGTTCTTAATCCAGATCTTGTTAAAGGACCGTGGACACAGGAGGAGGATGATAAAATAGTTGAACTGGTGTCAAAATACGGGCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAATGTCGAGAGAGGTGGCACAATCATCTTAATCCTGGAATAAAGAAGGATGCTTGGACTTTGGATGAGGAACTAGCCTTGATGAATGCTCATCATATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCTTTAAAGAAGAAGTTGGACTTTTACTTAGCCACAGGAAAACTTCCACCGGTTCCAAAAAACAATCCATTATTTGCTGCCAAAGATACATTTAGACGTTCTACTACGAAAACGATACCTGTTTCATCTAATATAGAATTAAATGTAGCTGTTGAAACATCCTCTGAAACTACTGCCATTAGTAAGCATGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGCTAGAGAAGTTGGTGATTCTTCAAGTGTCCCAGGAAATGAATCTGCTGATTCTGACTGTGTAGAGTGCAAGCCTGGACCATCCAATGTTGATCTTAGCTGTGGGAACTCAGAACATATATCAAGAGCTAATTTTGGAACAACTTATGGGCTAAATAATGAGAATTCCGCACTCAATGGAAACTTAATAACTCAGCATTATTTAAACAATGGTAAAATGAGCAACAGTAGTAGCAGCTTAATCAGAAAATCCGCTCAAGAAAATCAGAATTATGGTTCGTTGTGTTACGAGCCACCAGTTTTAGCTGGTTCAGTTCCGTTAGATTCTCTTCATCTAAGTATCCTCTGCATGCAGAACGATTACAGTTCTAAGTTGCCACCCATGGGTTTCATCACTCCACCTCGTGCGAGGGCTAGTGAGTTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCTGATACTTATCCAAATACTCCTTCCATATATAGGCGGAGAAGAACTGGAGTCCAACCACTCACTTCTCCTAGTAAAGTTTTAAAAGTCCACATTGATTCACATGCTTCAAATGAACCAGATAGAACCAAGAATAATTCTGGTTCTGAAGCTCGGGTGTTGTCCAAAAGTCCCGCAAGCCGTGACAATAAGAGTGTTATTCTTGATAATAAGGCATTCAGTGCATCTCCACCATACCGGTTAAGAACCAAACGAACAGCAGTTGTCAAATCTGTGGAGAAACAACTTGAGTTCGCATTTGATAAAGAAAAGAATGATGATTGTCTGCATGAAAGAAAATTGGTAGTGACGTAG 1653 0.4156 MAEVKSEEYCLENKQSTVASCSSASEGSGSVVHKSPGICSPPSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFNGKHWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPGIKKDAWTLDEELALMNAHHIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPVPKNNPLFAAKDTFRRSTTKTIPVSSNIELNVAVETSSETTAISKHDDSGKNQFESSGTAREVGDSSSVPGNESADSDCVECKPGPSNVDLSCGNSEHISRANFGTTYGLNNENSALNGNLITQHYLNNGKMSNSSSSLIRKSAQENQNYGSLCYEPPVLAGSVPLDSLHLSILCMQNDYSSKLPPMGFITPPRARASELCTETPESILRKAADTYPNTPSIYRRRRTGVQPLTSPSKVLKVHIDSHASNEPDRTKNNSGSEARVLSKSPASRDNKSVILDNKAFSASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDCLHERKLVVT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00985 550 MobiDBLite consensus disorder prediction 274 295 - -
Vifa5g00985 550 Gene3D - 162 224 - -
Vifa5g00985 550 PANTHER MYB PROTEIN-RELATED 57 128 - -
Vifa5g00985 550 Gene3D - 56 108 - -
Vifa5g00985 550 CDD SANT 60 103 IPR001005 -
Vifa5g00985 550 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Vifa5g00985 550 SUPERFAMILY Homeodomain-like 58 113 IPR009057 -
Vifa5g00985 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Vifa5g00985 550 MobiDBLite consensus disorder prediction 474 494 - -
Vifa5g00985 550 CDD SANT 163 206 IPR001005 -
Vifa5g00985 550 Pfam Myb-like DNA-binding domain 161 204 IPR001005 -
Vifa5g00985 550 Pfam Myb-like DNA-binding domain 109 155 IPR001005 -
Vifa5g00985 550 Pfam Myb-like DNA-binding domain 57 103 IPR001005 -
Vifa5g00985 550 FunFam Transcriptional activator Myb isoform A 109 161 - -
Vifa5g00985 550 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Vifa5g00985 550 FunFam Transcriptional activator Myb isoform A 56 108 - -
Vifa5g00985 550 CDD SANT 111 155 IPR001005 -
Vifa5g00985 550 MobiDBLite consensus disorder prediction 22 53 - -
Vifa5g00985 550 FunFam Transcription factor MYB3R-2 162 226 - -
Vifa5g00985 550 MobiDBLite consensus disorder prediction 258 302 - -
Vifa5g00985 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Vifa5g00985 550 SMART sant 56 105 IPR001005 -
Vifa5g00985 550 SMART sant 160 208 IPR001005 -
Vifa5g00985 550 SMART sant 108 157 IPR001005 -
Vifa5g00985 550 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Vifa5g00985 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 103 IPR017930 -
Vifa5g00985 550 Gene3D - 109 160 - -
Vifa5g00985 550 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Vifa5g00985 550 MobiDBLite consensus disorder prediction 467 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00985 Vifa-Chr5 291471873 291477214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00985 47 540 MYB Transcription Factor Family AT5G02320 48.039 5.35e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g00985 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00985 K09422 - gmx:100793280 829.32