Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00981 ATGGGTAACAGAATCGGCAACATGTGCCTCTGTTCCGCCGGAGCCGGTGATACCTGCTGCAGGTTGCAAAACACCTCTACCTTGTTGTCCAAGAAACCTGATAGAGCTGTTTGCACCTCTGTCACTTATGCCAGACCGGACCCACCTCGAATCTCCGGCGACGGGGACACATTGTCCGATGACTCTGCAGTCGCCACAATGAGTTTTGGGTCGGTGTCCAGCGCCGTGGTTAGTGCGAACTTGTCGTCAACGCCTTCCATTTACGTTGATGACTCTCTTCAAAACACTGTTTTGGATTCTTCTGCTTCGTTTGAAAGCTTTGGCTCTTTCGTTCCTTGGAGTCATTACGATCGTGTGAGGAATGGTGATTCCATTGAGGATGATGATTCAGAGCATGAGAAGATGAAGAAGGATAGTACTAGTAAGATCAGCTTGAAGAGGGTTCTGAGTAGAGTCTTTTCCAATGCAGTATTTGAAAAAGGCTTGAGTTTTAAGAAAAGTGACAATGGTAATGGGAGTGGTTATAGAAGACTGAGTTCTGGTACTAGTTTAAGTGGTGATGATGATGATGCGGCTGATGGTGGTGGTGGATGTGATGACTCGTTAATGGTGTGTGAAAATTTTGATATGGCTCGAGGAAAAGGTGGCGAGGATCGTGTTCATATTATATTATGCGAGGATCATGGATGGATTTATGTAGGGATATATGATGGATTCAATGGCCCTGATGCGACCGATTATCTTCAGAAGGACATGTTTTGCGCTGTGCATGACGAGCTTAAAGAGTTTCTATGTAATCGAAACGGTAATAGTGAAGAAAGTTTTAGTCACTCTGATGTGTTGGAAGCACTTTCTGAGGCATTGAGGAAAACTGAGGATGCGTTTTTGAAGATAGTCGATGAGATGATTACGCGGAATCCTGTGTTAGCTATGATGGGTTCTTGTGTTTTGGTTATGCTGATGAAAGGGGAAGATGTTTACTTGATGAATGTTGGTGATAGTCGTGCTGTTTTAGCTACTCGGACTGGGAATCATTTTCAGCTTACTGTCGATCATAGTGCTCATGCGAGAGAGGAGATTCGTAGAATCAAACAGGAGCATCCAGATGACGCTTCTGTGATAACTAATGGCCGAGTGAAGGGTTACTTGAATATCACAAGGGCTTTCGGCACAGGATTTCTTAAGCAGCCTAAACAAAATGATGCAATGTTAGCGACTTTCAAAGTTAACTACATAGGGGAATCTCCATATATCATATGCTCCCCTTCACTGCATCATCACAGGCTCTGCTCAAGTGACAAATTTCTCATACTGTCTTCTGATGGACTTTACCAATACTTCACCAATGAAGAAGCAGTTGCCAAAGTAGAGTTATTCATCAACACTTATCCTTACAAAAATCCTGCTCAACTTCTCATTGAAGAAGCACTCTGCCAAGCAGCCAAAAAACATTGTATGGAGATTCATGAGTTGCTTGATATATCACATGGAGCAAGAAGGAAATACCATGATGACATTACGGTTGTCATAATATCCTTGGAGGGAAAAATATGGCGTTCATAG 1563 0.4312 MGNRIGNMCLCSAGAGDTCCRLQNTSTLLSKKPDRAVCTSVTYARPDPPRISGDGDTLSDDSAVATMSFGSVSSAVVSANLSSTPSIYVDDSLQNTVLDSSASFESFGSFVPWSHYDRVRNGDSIEDDDSEHEKMKKDSTSKISLKRVLSRVFSNAVFEKGLSFKKSDNGNGSGYRRLSSGTSLSGDDDDAADGGGGCDDSLMVCENFDMARGKGGEDRVHIILCEDHGWIYVGIYDGFNGPDATDYLQKDMFCAVHDELKEFLCNRNGNSEESFSHSDVLEALSEALRKTEDAFLKIVDEMITRNPVLAMMGSCVLVMLMKGEDVYLMNVGDSRAVLATRTGNHFQLTVDHSAHAREEIRRIKQEHPDDASVITNGRVKGYLNITRAFGTGFLKQPKQNDAMLATFKVNYIGESPYIICSPSLHHHRLCSSDKFLILSSDGLYQYFTNEEAVAKVELFINTYPYKNPAQLLIEEALCQAAKKHCMEIHELLDISHGARRKYHDDITVVIISLEGKIWRS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00981 520 ProSiteProfiles PPM-type phosphatase domain profile. 201 513 IPR001932 -
Vifa5g00981 520 Pfam Protein phosphatase 2C 230 482 IPR001932 -
Vifa5g00981 520 CDD PP2Cc 216 513 IPR001932 -
Vifa5g00981 520 PANTHER PROTEIN PHOSPHATASE 2C 146 512 IPR015655 GO:0004722|GO:0006470
Vifa5g00981 520 SMART PP2C_4 201 511 IPR001932 -
Vifa5g00981 520 MobiDBLite consensus disorder prediction 173 192 - -
Vifa5g00981 520 SUPERFAMILY PP2C-like 212 514 IPR036457 -
Vifa5g00981 520 Gene3D - 199 518 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00981 Vifa-Chr5 289005189 289008402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00981 1 520 PP2C-type Phosphatase Gene Family AT1G07630 39.157 8.01e-142 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00981 - K01102 gmx:100804061 556.214