Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00980 ATGTCACTTAGCTGGATCTGCCAAACTTATTCAGATTTCTTTAACTGGAACAAGGTGAAGATACGCTATTGTGATGGTGCATCCTTTGCTGGTCACCCAGAAAGTGAGGTTAGGAAAGGAAGTGGGTTGTTCTTCAGAGGCCAGATCATATGGGAAACTATTATGAATGAACTCTTATCAATTGGCATGTCGAAAGCGAAGAAGGCTCTGTTGACAGGATGCTCTGCTGGAGGATTGGCAACTCTTATACACTGTGATAACTTCAGACAATTACTTCCAAAAGGGGCTACTGTTAAATGTCTCGCGGATGCAGGCTTCTTCCTCAATGAGAAGGATATTCTTGGAAATAGCACAATGAAATCTTTCTATCAGGATGTTGTTCAGCTCCAGGGTGTTGCAAAAAGTTTGCACAAAGAGTGCCTTGCTAAAATGGAACCATCTAAGTGTTTCTTTTCATCCGAAATTCTGAAAAACATAAAGACTCCTGTTTTTCTTGTTCACCCAGCTTATGATTTTTGGCAGATACACAATATTTTGGTACCTCAAGGATCAGATCCTCATCGTCGCTGGAAAAGCTGTAGATTGAACATTCAAAGTTGTGATGCTAACTTGATGGATACACTTAACAATTTTCGAAGTTCTTTGCTGAAGACTGTGAACGAGTTCCAGCAACGAAAGGATATTGGAATGTTTATAGATTCCTGCTTTATCCACTGCCAGACTTTGATGGAAGAGACTTGGTTTTCACCTAATTCTCCAAAAATAAACGATAAGACAATTGCTGAATCCGTTGCCGATTGGTTCTTTGACCGACAAGTGGTAAAGCTTATTGATTGTCCTTATCCATGTAATCCTACTTGCCATAATTTGGATTTCGCCAGAGTATAA 888 0.3986 MSLSWICQTYSDFFNWNKVKIRYCDGASFAGHPESEVRKGSGLFFRGQIIWETIMNELLSIGMSKAKKALLTGCSAGGLATLIHCDNFRQLLPKGATVKCLADAGFFLNEKDILGNSTMKSFYQDVVQLQGVAKSLHKECLAKMEPSKCFFSSEILKNIKTPVFLVHPAYDFWQIHNILVPQGSDPHRRWKSCRLNIQSCDANLMDTLNNFRSSLLKTVNEFQQRKDIGMFIDSCFIHCQTLMEETWFSPNSPKINDKTIAESVADWFFDRQVVKLIDCPYPCNPTCHNLDFARV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00980 295 PANTHER NOTUM-RELATED 11 290 IPR004963 GO:0016787
Vifa5g00980 295 Pfam Pectinacetylesterase 11 273 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00980 Vifa-Chr5 288964362 288966538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00980 12 259 Carbohydrate Esterase AT3G09410 64.516 4.94e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00980 K19882 - gmx:100792819 481.87