Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00976 ATGTCTCCTTGCTCCATAACAAACAACCTCCCCCTCCGTAATCTTTCAACATCCTTCAAAAAATGGAGCACAAAACAATACACAATCGCCGCATTCGCCTTACTCCTCTTCTTCTCATACGCTTTCCTTATCCGATCCAATCCCCACTCTCATCACTCTCACTCCTACTCCAACCTCATTCCCTTCACCCCTCTCACCAACTTCAAACAAATCGGCGCACTTTGCTTGGATGGGTCTGCTCCTGGTTACCATTTCCAAGAGGGATTTGGATCCGGATCGCCTAATTGGTTGCTTCATCTCGAGGGAGGAGGGTGGTGCAGTTCCGTAGCTTCATGTTCTTATAGGAAAACAACTGCTTTGGGCTCGTCTCATTATATGGATACACCTGTTCTTTTTACAGGGATGCTAAGTTCTCTTCCTTCTCAAAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGCTATTGTGATGGTGCATCCTTTGCTGGTCACCCAGAAAGTGAGGTTAGGAAAGGAAGTGGGTTGTTCTTCAGAGGCCAGATCATATGGGAAACTATTATGAATGAACTCTTATCAATTGGCATGTCGAAAGCGAAGAAGGCTCTGTTGACAGGATGCTCTGCTGGAGGATTGGCAACTCTTATACACTGTGATAACTTCAGACAATTACTTCCAAAAGGGGCTACTGTTAAATGTCTCGCGGATGCAGGCTTCTTCCTCAATGAGAAGGATATTCTTGGAAATAGCACAATGAAATCTTTCTATCAGGATGTTGTTCAGCTCCAGGGTGTTGCAAAAAGTTTGCACAAAGAGTGCCTTGCTAAAATGGAACCATCTAAGTGTTTCTTTTCATCCGAAATTCTGAAAAACATAAAGACTCCTGTTTTTCTTGTTCACCCAGCTTATGATTTTTGGCAGATACACAATATTTTGGTACCTCAAGGATCAGATCCTCATCGTCGCTGGAAAAGCTGTAGATTGAACATTCAAAGTTGTGATGCTAACTTGATGGATACACTTAACAATTTTCGAAGTTCTTTGCTGAAGACTGTGAACGAGTTCCAGCAACGAAAGGATATTGGAATGTTTATAGATTCCTGCTTTATCCATTGCCAGACTTTGATGGAAGAGACTTGGTTTTCACCTAATTCTCCAAAAATAAACGATAAGACAATTGCTGAATCCGTTGCCGATTGGTTCTTTGACCGACAAGTGGTAAAGCTTATTGATTGTCCTTATCCATGTAATCCTACTTGCCATAATTTGGATTTCACCAGAGTATAA 1287 0.4196 MSPCSITNNLPLRNLSTSFKKWSTKQYTIAAFALLLFFSYAFLIRSNPHSHHSHSYSNLIPFTPLTNFKQIGALCLDGSAPGYHFQEGFGSGSPNWLLHLEGGGWCSSVASCSYRKTTALGSSHYMDTPVLFTGMLSSLPSQNPDFFNWNKVKIRYCDGASFAGHPESEVRKGSGLFFRGQIIWETIMNELLSIGMSKAKKALLTGCSAGGLATLIHCDNFRQLLPKGATVKCLADAGFFLNEKDILGNSTMKSFYQDVVQLQGVAKSLHKECLAKMEPSKCFFSSEILKNIKTPVFLVHPAYDFWQIHNILVPQGSDPHRRWKSCRLNIQSCDANLMDTLNNFRSSLLKTVNEFQQRKDIGMFIDSCFIHCQTLMEETWFSPNSPKINDKTIAESVADWFFDRQVVKLIDCPYPCNPTCHNLDFTRV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00976 428 PANTHER NOTUM-RELATED 37 422 IPR004963 GO:0016787
Vifa5g00976 428 Pfam Pectinacetylesterase 58 406 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00976 Vifa-Chr5 288862766 288866442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00976 20 392 Carbohydrate Esterase AT3G09410 58.793 2.90e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00976 K19882 - gmx:100792819 619.772