Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00972 ATGTCTCCACCTGGTTCATCAAGATGGAGCCCTACAACTGAACAGCTTATGATCTTGGAAGAACTGTATAGAAGTGGAATTAGAACTCCTAGTGCTTCTCAAATTCAGCAAATTACTACTCACCTTTCTTTCTATGGTAGGATAGAAGGAAAAAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGATAGACAGAAACTTAGAAGGAAACTCAACAAACAACTGCAGCTACAGCAGCAACAGCAACAGCATCAACAGCAGCCACATCAACAACAACTTCAACTTCATCATTGTCAACTCAATCATGATAATATCATGATCAATAATCATTTTGTTGATGGTACTTTTGGTTACCCTTTTGGATCTTCTACTCAAGACTTTTCCTTTTTTAACTCACCTAGCTTGCTTTTTGAGGGATCATATGCTGCAAACACATCAGAAGGGCCAATCAATAGCAAATGGAATGGCTATAACAACCAACAAAATTTGATGGAGAAGAAAGAGATTGCATTCAACAACTATGGTTGGAGCCACCTTATGGATAATGTTAATCATCATGAACCACCTTCATGTTGCACCAAACCTCTCAAGACTCTTGATCTCTTTCCACTCACAACAAGGATCAAAGAAGATTAA 639 0.3787 MSPPGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQQQHQQQPHQQQLQLHHCQLNHDNIMINNHFVDGTFGYPFGSSTQDFSFFNSPSLLFEGSYAANTSEGPINSKWNGYNNQQNLMEKKEIAFNNYGWSHLMDNVNHHEPPSCCTKPLKTLDLFPLTTRIKED 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00972 212 CDD homeodomain 8 67 IPR001356 GO:0003677
Vifa5g00972 212 MobiDBLite consensus disorder prediction 73 92 - -
Vifa5g00972 212 SMART HOX_1 4 71 IPR001356 GO:0003677
Vifa5g00972 212 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Vifa5g00972 212 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 207 IPR044555 GO:0003700|GO:0099402
Vifa5g00972 212 SUPERFAMILY Homeodomain-like 7 67 IPR009057 -
Vifa5g00972 212 Gene3D - 2 67 - -
Vifa5g00972 212 FunFam WUSCHEL-related homeobox 4 6 73 - -
Vifa5g00972 212 MobiDBLite consensus disorder prediction 72 92 - -
Vifa5g00972 212 Pfam Homeodomain 7 66 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00972 Vifa-Chr5 288522317 288523412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00972 1 74 Wox Gene Family AT2G28610 83.784 1.01e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa5g00972 Homeodomain 7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00972 - - gmx:102663963 235.343