Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00964 ATGGAAAAAATATCGATGCAGTTGGAAAGATTGCATATGGAGTCAAACCGAAAAATTGAAGCTATCAACAGAGAAAATCTAAACAATAGACAAAAGTTTGGCTGTGAGAAGGGAACTGGTATCGATAGAGCAAGGATGAATATGACAAAGTTGAATACGTATCGAATGGCATATTTTGTCCTTGCAAAGATCTTAAAGAATGTGACAAAAGGTGCAATCATTGAGGACACTTTGTTAATGGGAGCAGATTATTATGAGACGGATGCTGATAGGAGATTTTTGGCTGCTAAAGGCGGTGTTCCAATTGTTATTGGGAAGAATTCTCATATCAGAAGGGCAATCATTGACAAGAATGCTAGAATTGGTGACGACGTCAAGATCATTAACAGTGACAATGTACAAGAAGCTGCAAGGGAAACCGAAGGTTATTTCATAAATAGTGGTATTGTCACAGTAATCAAGGATGCATTAATTCCAAGTGGTACTGTCATCTAA 495 0.3737 MEKISMQLERLHMESNRKIEAINRENLNNRQKFGCEKGTGIDRARMNMTKLNTYRMAYFVLAKILKNVTKGAIIEDTLLMGADYYETDADRRFLAAKGGVPIVIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFINSGIVTVIKDALIPSGTVI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00964 164 Coils Coil 5 25 - -
Vifa5g00964 164 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 67 164 IPR011831 GO:0005978|GO:0008878
Vifa5g00964 164 Gene3D Hexapeptide repeat proteins 64 164 - -
Vifa5g00964 164 SUPERFAMILY Trimeric LpxA-like enzymes 67 164 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00964 Vifa-Chr5 285757722 285758900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00964 18 49 SNARE and Associated Proteins AT5G08080 59.375 5.44e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00964 K00975 - egt:105968428 177.178