Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00955 ATGGCGAAAACCAAGGGTTTCAACATTCTCCACAACCTCATCGACATTGCCACCGAAATCTCTCAAATCTCCGCCTTCCATTCCCTCATCAAAACTCAGTCCTTCGATCTCAGCCGTAGGATCACTTTCCTCATTCCCCTCTTTCAACACCTCGCCAACGACGTCGTTTTTGTTCCTTACGAAACTCTCGTTTCTCTTCAAGAAGCTCTTCTCTCAGCTAAAGACTTGCTTCGGTTTTGTTCTAGCTCAAGCCAGCTCTACATGATATTGGAGAGGGAGAAAGTTAAGTGCAGATTCACGGATCTGGCTTCACATTTTGAACAAGCTATAAACGAGACTTCGTATGACAAACTTGATATTTCTGAGGAGCTAAAGGAGCAGGTTGCACTTGTGGTTGCTCAGTTTCGAAGGGCCAAAGAGCATTTCTATCCACCTGGTCTGGAGCTTTATGAGCACCTGTTGTCTATCTATAACCAGAACTGTGATGTGACTACTGAATCTGATGCACTGCGTTTAATATGTGAAAAACTACAATTTGTGAGTGCTGAAGATATTGAAAAAGAGTCACTTGCTCTTCATAAGGTGATTGTTGATGGGGGTGGTTATTATGAGAAAAGCTTGCAGGGATTGTCAATGGTGCTGAGAAAAATTGAAGATTTTTTGTTGAAGGACTCTGAAAATAAGGAAGATGGTTGTTTTGAGAAAAGCACACAGGTGTTATCGAGTGGGGATTTCCCTCCTCACACTAATTATCCGTGCGTGAAATTATGTTGTCAGTCACCAGTTGTGCCAGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAATGATCCTGTCATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATTAGGAAATGGCTTGATACAGGGCATCGATCATGTCCCATTACTCGGCAGATTGTTTCCAGCCCCATTCTCGTACCTAATCATGTTTTGTACAACCTGATATCAAATTGGTGCGAGGCAAACGGAGTTGAACCACCTAAAAGGTTAGAAAGTTTACGGCTATGTAAGGAAACATCAGATGGCTCCTCTGAATTAATAGACCTTGATGTCTTAATGAGGAGACTTATCTCCAGATACATTGAGGATCAGCGATGTGCAGCAGGGGAGCTCCGTCTTCTTGCTAAACACAACAGTGAAAATCGAAAGTTGATTGCTGAAGCTGGTGCTATACCCCTCCTCACTGATCTCCTCTATACTCCTGATGCTGGCACCCAGGAGCATGCAGTTACTGCTCTTCTGAATCTATCTATCTACGAAGAAAACAAAGAGCGCATCATGGCTTCTGATGCTGTGCCGGGAATCCTTTACGTGCTAAAAAATGGTAGCATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAACCTCTCTTCAGCAGATGAGAACAAAATGATAATCGGTGCATCTGGAGCAATCCAGGCTCTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGGTTGATGCTGCATCAGCTCTATTCAAACTGTGTATATACCAAGGGAACAAAGGACGTGCTGTTAAGGCTGGTATTGTACCCAAGTTGATAGAAATGTTAACAGAACCAGGCGGAGAGATGAGGGGCGAGGCATTGGCAATACTAGCTGTAATAGCTAGCCACCCGGACGGAAAAGCCGCAATTGGATCCATGAATGCTATTCCTATTTTGGTGGAACTAATCTGTAATGGATCTTATAGGAACAAAGAGAATGCGACTTCGGTGCTTGTATGCATCTGCAAAGGAGATCCACTACACCTACCGATTGTCGCATCACATGAAGTGATCAATCCTCTCATGGAACTGGCCGCAAATGGTTCAGAAAGGGGCAGGCGGAAAGCTGAACAGCTTCTTGAGCTGTTAGGCAATTAG 1908 0.4429 MAKTKGFNILHNLIDIATEISQISAFHSLIKTQSFDLSRRITFLIPLFQHLANDVVFVPYETLVSLQEALLSAKDLLRFCSSSSQLYMILEREKVKCRFTDLASHFEQAINETSYDKLDISEELKEQVALVVAQFRRAKEHFYPPGLELYEHLLSIYNQNCDVTTESDALRLICEKLQFVSAEDIEKESLALHKVIVDGGGYYEKSLQGLSMVLRKIEDFLLKDSENKEDGCFEKSTQVLSSGDFPPHTNYPCVKLCCQSPVVPEEFRCPISLELMNDPVIISTGQTYERACIRKWLDTGHRSCPITRQIVSSPILVPNHVLYNLISNWCEANGVEPPKRLESLRLCKETSDGSSELIDLDVLMRRLISRYIEDQRCAAGELRLLAKHNSENRKLIAEAGAIPLLTDLLYTPDAGTQEHAVTALLNLSIYEENKERIMASDAVPGILYVLKNGSMEARENAAATFFNLSSADENKMIIGASGAIQALVTLFCEGSQRGKVDAASALFKLCIYQGNKGRAVKAGIVPKLIEMLTEPGGEMRGEALAILAVIASHPDGKAAIGSMNAIPILVELICNGSYRNKENATSVLVCICKGDPLHLPIVASHEVINPLMELAANGSERGRRKAEQLLELLGN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00955 635 Coils Coil 623 635 - -
Vifa5g00955 635 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Vifa5g00955 635 PANTHER U BOX DOMAIN-CONTAINING 29 633 - -
Vifa5g00955 635 SUPERFAMILY ARM repeat 354 633 IPR016024 -
Vifa5g00955 635 CDD RING-Ubox_PUB 264 316 IPR045210 -
Vifa5g00955 635 Gene3D - 4 115 IPR036537 GO:0007166
Vifa5g00955 635 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Vifa5g00955 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Vifa5g00955 635 SMART arm_5 471 511 IPR000225 GO:0005515
Vifa5g00955 635 SMART arm_5 389 429 IPR000225 GO:0005515
Vifa5g00955 635 SMART arm_5 512 552 IPR000225 GO:0005515
Vifa5g00955 635 SMART arm_5 553 593 IPR000225 GO:0005515
Vifa5g00955 635 SMART arm_5 430 470 IPR000225 GO:0005515
Vifa5g00955 635 FunFam RING-type E3 ubiquitin transferase 346 635 - -
Vifa5g00955 635 Gene3D - 341 495 IPR011989 -
Vifa5g00955 635 Gene3D - 496 633 IPR011989 -
Vifa5g00955 635 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Vifa5g00955 635 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Vifa5g00955 635 FunFam RING-type E3 ubiquitin transferase 263 335 - -
Vifa5g00955 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Vifa5g00955 635 SUPERFAMILY RING/U-box 263 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00955 Vifa-Chr5 282570348 282576671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00955 11 631 U-box Gene Family AT3G46510 50.160 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00955 - - vum:124836668 783.482