Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00952 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAAAGAAAGAGAAGAAGATGGTTTTGGAAGTTTAGGAGAAAAAGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGATTAATGATGCTACAAATCATCAAGATGATGATGATGATGATCTTTTAGCATCATGTTCATCAACATCATCATCCTCATCATGTTCAACTCCATTGAAAACCATTGCATGTACTACTTCAACTACTACGACTACAACTGCAACATCTTCTTCCTCTTCTGCGTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATCATGATAATAGTAATAATCAAGGTTTTATGAACATGCATGGTCCATTAGATCATCATCATCATGGTCAACATGCAACTGTAGAGATTCCTCAACAAGAACAACAACAAGATCTTGGTGTTGGTGGTGATTGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAGTTTTTTGACCCTGCTTCGATTTTTCAAACCGAAGAAGAAAACCCTTTAGTTGATGATTTCACACATGAACAAGTTCTAGTACAACAACAACAGCATCAACAAGTTCCTATAGTGGTGCATGATGATGGTGAAACAAAACTAGACCTCAATTTTGATGGTGTTAATGATGGTGTTCATGATGAGATGAGTAATGTTTTCTTGGAATGGCTGAAATCGAACAAAGATAGTGTATCGGCGAATGATTTGAGGAATGTGAAGCTTAAGAAATCGACAATTGAAAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGGCTCAAAGAAAACAACAATAACTCAACAACCTCAATTCTTGTTCCTCAACATACACCGCCGCAGTTTCAAGATCTATGTCCGAACCCAAACTCAACAAACACATCTTTTAACCAAACTTCATGGATAGATCAAACACAAACGCAAACACAAACACCTCTTGTTGTTCCTCCACAACAATTTTTGCAACCGATGGTTGGTGTTGGATATGTTGGTGATGTTCATTATACAAATGGTTCCGTTTCGAATAACGTTAACCATAATGTGAACCTTTACCAACATGGTTCTAGTAATGAGTATCATCAATTCAATGTTGTTCCAAATTACAATCAACCGTCATTTGTGGATAGCAACAACAATGTTCTACAAGCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGTGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGACAACGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCATCATCTTCAGAACCAAGGTTCTGATTCGGGTGCAAGATTGGGTGGTGGTGGTGGTCATAATTGCACCAATGGCGCGGGTGTTGGTTCTCATGCGAATCAAGGTAACTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCGACTGCTGTTCCGGCTGAGCCTGTGCAGCCGCCAGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCAGGGTCGAAATGCATTGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGACGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAAGCCGAAACTCATTTGCCTGAACTCGAGGCAAGAGATGGAATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTATTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAACAAAACCAGAGGCGAAGAAAACCGGAAAAGCACAGAAAAACCAGCAGCATGGGAATAATAGTAATACAGCTGGAAATGATGCGGCGGATAATAAAGACACACCATCTTCACCAAAGAGGAAGAAATGA 2178 0.3962 MECGLDLHAKMVKEREEDGFGSLGEKEKLVAVSEREIWINDATNHQDDDDDDLLASCSSTSSSSSCSTPLKTIACTTSTTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHHDNSNNQGFMNMHGPLDHHHHGQHATVEIPQQEQQQDLGVGGDCMEDVMMDTFGYMELLETNEFFDPASIFQTEEENPLVDDFTHEQVLVQQQQHQQVPIVVHDDGETKLDLNFDGVNDGVHDEMSNVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNSTTSILVPQHTPPQFQDLCPNPNSTNTSFNQTSWIDQTQTQTQTPLVVPPQQFLQPMVGVGYVGDVHYTNGSVSNNVNHNVNLYQHGSSNEYHQFNVVPNYNQPSFVDSNNNVLQAHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNHHLQNQGSDSGARLGGGGGHNCTNGAGVGSHANQGNWMYWQSMAGGKATAVPAEPVQPPVERDRTNNQTQNSHQGRNALDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGTKPEAKKTGKAQKNQQHGNNSNTAGNDAADNKDTPSSPKRKK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00952 725 MobiDBLite consensus disorder prediction 695 715 - -
Vifa5g00952 725 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 243 694 IPR044800 GO:0003700
Vifa5g00952 725 ProSiteProfiles B3 DNA-binding domain profile. 576 680 IPR003340 GO:0003677
Vifa5g00952 725 MobiDBLite consensus disorder prediction 101 137 - -
Vifa5g00952 725 SUPERFAMILY DNA-binding pseudobarrel domain 575 673 IPR015300 -
Vifa5g00952 725 SMART B3_2 576 678 IPR003340 GO:0003677
Vifa5g00952 725 MobiDBLite consensus disorder prediction 463 482 - -
Vifa5g00952 725 Pfam B3 DNA binding domain 577 675 IPR003340 GO:0003677
Vifa5g00952 725 Gene3D - 567 688 IPR015300 -
Vifa5g00952 725 CDD BfiI_C_EcoRII_N_B3 574 677 - -
Vifa5g00952 725 MobiDBLite consensus disorder prediction 542 559 - -
Vifa5g00952 725 MobiDBLite consensus disorder prediction 681 725 - -
Vifa5g00952 725 MobiDBLite consensus disorder prediction 458 499 - -
Vifa5g00952 725 FunFam B3 domain-containing transcription factor FUS3 572 689 - -
Vifa5g00952 725 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00952 Vifa-Chr5 280464019 280467377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00952 35 709 B3 DNA Binding Superfamily AT3G24650 43.689 6.51e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00952 B3 4.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00952 K09287 - psat:127127675 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00952 5 280464019 280467377 Vifa5g00952 5 280464019 280467377 ECH