Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00951 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAAAGAAAGAGAAGAAGATGGTTTTGGAAGTTTAGGAGAAAAAGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGATTAATGATGCTACAAATCATCAAGATGATGATGATGATGATCTTTTAGCATCATGTTCATCAACATCATCATCCTCATCATGTTCAACTCCATTGAAAACCATTGCATGTACTACTTCAACTACTACGACTACAACTGCAACATCTTCTTCCTCTTCTGCGTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATCATGATAATAGTAATAATCAAGGTTTTATGAACATGCATGGTCCATTAGATCATCATCATCATGGTCAACATGCAACTGTAGAGATTCCTCAACAAGAACAACAACAAGATCTTGGTGTTGGTGGTGATTGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAGTTTTTTGACCCTGCTTCGATTTTTCAAACCGAAGAAGAAAACCCTTTAGTTGATGATTTCACACATGAACAAGTTCTAGTACAACAACAACAGCATCAACAAGTTCCTATAGTGGTGCATGATGATGGTGAAACAAAACTAGACCTCAATTTTGATGGTGTTAATGATGGTGTTCATGATGAGATGAGTAATGTTTTCTTGGAATGGCTGAAATCGAACAAAGATAGTGTATCGGCGAATGATTTGAGGAATGTGAAGCTTAAGAAATCGACAATTGAAAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGGCTCAAAGAAAACAACAATAACTCAACAACCTCAATTCTTGTTCCTCAACATACACCGCCGCAGTTTCAAGATCTATGTCCGAACCCAAACTCAACAAACACATCTTTTAACCAAACTTCATGGATAGATCAAACACAAACGCAAACACAAACACCTCTTGTTGTTCCTCCACAACAATTTTTGCAACCGATGGTTGGTGTTGGATATGTTGGTGATGTTCATTATACAAATGGTTCCGTTTCGAATAACGTTAACCATAATGTGAACCTTTACCAACATGGTTCTAGTAATGAGTATCATCAATTCAATGTTGTTCCAAATTACAATCAACCGTCATTTGTGGATAGCAACAACAATGTTCTACAAGCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGTGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGACAACGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCATCATCTTCAGAACCAAGGTTCTGATTCGGGTGCAAGATTGGGTGGTGGTGGTGGTCATAATTGCACCAATGGCGCGGGTGTTGGTTCTCATGCGAATCAAGGTAACTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCGACTGCTGTTCCGGCTGAGCCTGTGCAGCCGCCAGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCAGGGTCGAAATGCATTGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGACGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAAGCCGAAACTCATTTGCCTGAACTCGAGGCAAGAGATGGAATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTATTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAACAAAACCAGAGGCGAAGAAAACCGGAAAAGCACAGAAAAACCAGCAGCATGGGAATAATAGTAATACAGCTGGAAATGATGCGGCGGATAATAAAGACACACCATCTTCACCAAAGAGGAAGAAATGA 2172 0.3959 MECGLDLHAKMVKEREEDGFGSLGEKEKLVAVSEREIWINDATNHQDDDDDDLLASCSSTSSSSSCSTPLKTIACTTSTTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHHDNSNNQGFMNMHGPLDHHHHGQHATVEIPQQEQQQDLGVGGDCMEDVMMDTFGYMELLETNEFFDPASIFQTEEENPLVDDFTHEQVLVQQQQHQQVPIVVHDDGETKLDLNFDGVNDGVHDEMSNVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNSTTSILVPQHTPPQFQDLCPNPNSTNTSFNQTSWIDQTQTQTQTPLVVPPQQFLQPMVGVGYVGDVHYTNGSVSNNVNHNVNLYQHGSSNEYHQFNVVPNYNQPSFVDSNNNVLQAHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNHHLQNQGSDSGARLGGGGGHNCTNGAGVGSHANQGNWMYWQSMAGGKATAVPAEPVQPPVERDRTNNQTQNSHQGRNALDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGTKPEAKKTGKAQKNQQHGNNSNTAGNDAADNKDTPSSPKRKK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00951 723 Pfam B3 DNA binding domain 577 673 IPR003340 GO:0003677
Vifa5g00951 723 SMART B3_2 576 676 IPR003340 GO:0003677
Vifa5g00951 723 MobiDBLite consensus disorder prediction 101 137 - -
Vifa5g00951 723 ProSiteProfiles B3 DNA-binding domain profile. 576 678 IPR003340 GO:0003677
Vifa5g00951 723 MobiDBLite consensus disorder prediction 463 482 - -
Vifa5g00951 723 MobiDBLite consensus disorder prediction 679 723 - -
Vifa5g00951 723 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 243 692 IPR044800 GO:0003700
Vifa5g00951 723 FunFam B3 domain-containing transcription factor FUS3 572 687 - -
Vifa5g00951 723 CDD BfiI_C_EcoRII_N_B3 574 675 - -
Vifa5g00951 723 MobiDBLite consensus disorder prediction 693 713 - -
Vifa5g00951 723 MobiDBLite consensus disorder prediction 542 559 - -
Vifa5g00951 723 Gene3D - 572 692 IPR015300 -
Vifa5g00951 723 SUPERFAMILY DNA-binding pseudobarrel domain 575 671 IPR015300 -
Vifa5g00951 723 MobiDBLite consensus disorder prediction 458 499 - -
Vifa5g00951 723 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00951 Vifa-Chr5 280464019 280467377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00951 35 707 B3 DNA Binding Superfamily AT3G24650 43.811 5.10e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00951 B3 3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00951 K09287 - psat:127127675 1074.69