Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00950 ATGCCGGAGAGTTTAGGGAAGTTGTCGAATCTTGAAGAGCTTATGTTGAGTAATAACAACATTTCTGGTACGATACCGGGTTCGATTTCGAATCTTACGAATTTGATTCAGTTGCAGTTGGATACAAATGAGATATCGGGTTTGATTCCGGTTGAGATTGGTAAGTTGACGAAGCTAACTGTTTTTTTCGCGTGGCAGAATAGACTTGAAGGTAGAATTCCGTCGGAGTTAGGAGATTGTTTAAGCCTGGAGGCTTTGGATTTGTCTTATAATGAACTCAGTGATAGTTTACCTTCAAATCTTTTTAAGCTTCGGAATTTAACCAAGCTTTTGTTGATTTCTAATGAGATCTCTGGCTCTATTCCTCCTGAGATTGGTAATTGTAGTTCTCTCATTCGACTCCGGCTCGTGGATAACAGAATCAATGGTGAGATACCGAGAGAGATAGGTTTTCTCAGTAACCTTAGTTTCCTTGATTTGTCTGGAAATCGTCTTAGTGGTTCGGTACCGATAGAGATTGGAAAATGTAGAGAACTTCAAATGTTGAATCTAAGTAATAACTCGCTTTCGGGTGATTTGCATAGTTATTTGTCTTCTCTTACAATGCTAGAGGTTTTGGATGTTTCGATGAATAATATTTCTGGCGAGGTTCCAATGAGTATTGGGGAGTTAAGTTCACTTCTTAGAGTTATTTTGAGCAAAAACTCTTTCTCTGGATCAATTCCTTCATCACTTGGGAAATGTTCAGGTATTCAACTTCTTGATCTTAGCAAAAACATGTTCTCCGGGAGCATACCGCGCGAGTTGTTTCAAATTGAAGCACTTGATATAGCTTTAAATTTGAGTCATAATGCTTTATCAGGAGTGATCCCGGTTGAGATATCGGCTCTTAACAAGTTGTCTGTTTTAGACATTTCGCATAACAATCTTGAAGGTGACTTGATGGTGTTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCGTATAACAAGTTCACCGGTTATTTACCAGAAAGCAAGTTGTTTCATCAACTAGCAGCAACAGATTTGGATGGAAATCATGGTTTGTGTCCTAATGGACATGATTCATGTTTCATTGGAAGTTCTGCAATGACAAAGATGTTAAATGGCTCTAATTCTAAGAGGTCGGAGATGATCAAAGTTGCGATTGGATTGCTCAGTTCTTTGGCCGTTGGAATGGCAATCTTTGGAGTTGTTACTGTCTTTCGAGCAAGGAGAATGGTTCGAGACGACACAGATTCCGAGATGGGAGGAGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTTCGTGTGGACCAAATTCTAAAATGTTTAGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATCGTTTATCGCGCGGAAATGGAAAACGGCGATGTCATTGCTGTCAAAAGGCTCTGGCCAACAACAACGGCAGCCACTGCTTCCGCAAGATATGATCATAGTCAAAGTGACAAGTTAGCTGTTAACGGAGGAATTCGCGATTCGTTTTCCGCCGAGGTTAAAACTCTTGGTTCGATTCGCCACAAGAACATCGTGAGGTTCTTAGGATGCTGTTGGAATAGAAACACAAGGTTGCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAGGCTTACTTCATGAAACAAGTGGTAATTGCTTGGAGTGGCACATTAGATTCAAGATAATACTAGGAGCTGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCCTCCCATTGTTCACAGAGACATTAAGGCCAACAACATCCTCATAGGACTTGAATTTGAACCTTACATTGCTGATTTCGGACTTGCAAAACTCGTCGATGATGGAGATTTCGCAAGATCTTCTAGCACACTTGCCGGTTCTTATGGTTACATAGCTCCTGAGTACGGATACATGATGAAGATAACAGAGAAAAGTGATGTATACAGCTACGGCATAGTTGTATTAGAAGTACTAACAGGCAAACAACCGATCGATCCAACAATACCAGACGGACTTCACATTGTCGATTGGGTTAGACAGAAAAGAGGACGAGTTGAAGTGCTCGACGAAAGCTTAACAGCAAGGCCAGAATCCGAAATAGAAGAGATGTTGCAGACTCTAGGTGTTGCTTTGCTATGCGTAACCTCGAATCCAGACGACAGACCAACGATGAAAGACGTGGTGGCCATGATGAAAGAGATTAAACAAGAGAGAGATGAATGTGTGAAAGTTTTTGATCAACATGAGAGTAATCATTCTAATCAAGACTCAGTGCAAGGGATGAAACATTCAGGTTCAGCAACAAGTAGCAGTAACATGAATATCAATTTACATTACTCTCCTCATATTTCTACAACACTAGATTAA 2400 0.4058 MPESLGKLSNLEELMLSNNNISGTIPGSISNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFAWQNRLEGRIPSELGDCLSLEALDLSYNELSDSLPSNLFKLRNLTKLLLISNEISGSIPPEIGNCSSLIRLRLVDNRINGEIPREIGFLSNLSFLDLSGNRLSGSVPIEIGKCRELQMLNLSNNSLSGDLHSYLSSLTMLEVLDVSMNNISGEVPMSIGELSSLLRVILSKNSFSGSIPSSLGKCSGIQLLDLSKNMFSGSIPRELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDISHNNLEGDLMVFSGLENLVSLNISYNKFTGYLPESKLFHQLAATDLDGNHGLCPNGHDSCFIGSSAMTKMLNGSNSKRSEMIKVAIGLLSSLAVGMAIFGVVTVFRARRMVRDDTDSEMGGGGGGDSWPWQFTPFQKVNFRVDQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAATASARYDHSQSDKLAVNGGIRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHETSGNCLEWHIRFKIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGRVEVLDESLTARPESEIEEMLQTLGVALLCVTSNPDDRPTMKDVVAMMKEIKQERDECVKVFDQHESNHSNQDSVQGMKHSGSATSSSNMNINLHYSPHISTTLD 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00950 799 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 194 277 - -
Vifa5g00950 799 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 98 193 - -
Vifa5g00950 799 FunFam Putative LRR receptor-like serine/threonine-protein kinase 278 363 - -
Vifa5g00950 799 ProSiteProfiles Protein kinase domain profile. 454 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00950 799 PRINTS Leucine-rich repeat signature 155 168 - -
Vifa5g00950 799 PRINTS Leucine-rich repeat signature 297 310 - -
Vifa5g00950 799 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 139 747 - -
Vifa5g00950 799 Pfam Protein tyrosine and serine/threonine kinase 458 740 IPR001245 GO:0004672|GO:0006468
Vifa5g00950 799 MobiDBLite consensus disorder prediction 760 799 - -
Vifa5g00950 799 ProSiteProfiles Leucine-rich repeat profile. 10 32 IPR001611 GO:0005515
Vifa5g00950 799 SMART serkin_6 454 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00950 799 ProSitePatterns Protein kinases ATP-binding region signature. 460 482 IPR017441 GO:0005524
Vifa5g00950 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Vifa5g00950 799 SUPERFAMILY RNI-like 2 341 - -
Vifa5g00950 799 SUPERFAMILY Protein kinase-like (PK-like) 441 742 IPR011009 -
Vifa5g00950 799 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 550 760 - -
Vifa5g00950 799 Pfam Leucine rich repeat 9 68 IPR001611 GO:0005515
Vifa5g00950 799 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 437 549 - -
Vifa5g00950 799 Gene3D Phosphorylase Kinase; domain 1 439 549 - -
Vifa5g00950 799 SMART LRR_sd22_2 152 173 - -
Vifa5g00950 799 SMART LRR_sd22_2 8 34 - -
Vifa5g00950 799 SMART LRR_sd22_2 200 226 - -
Vifa5g00950 799 SMART LRR_sd22_2 297 322 - -
Vifa5g00950 799 MobiDBLite consensus disorder prediction 762 799 - -
Vifa5g00950 799 Gene3D Ribonuclease Inhibitor 1 105 IPR032675 -
Vifa5g00950 799 Gene3D Ribonuclease Inhibitor 106 367 IPR032675 -
Vifa5g00950 799 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 2 97 - -
Vifa5g00950 799 Gene3D Transferase(Phosphotransferase) domain 1 550 770 - -
Vifa5g00950 799 SMART LRR_typ_2 8 32 IPR003591 -
Vifa5g00950 799 SMART LRR_typ_2 224 248 IPR003591 -
Vifa5g00950 799 SMART LRR_typ_2 320 345 IPR003591 -
Vifa5g00950 799 SMART LRR_typ_2 152 176 IPR003591 -
Vifa5g00950 799 SMART LRR_typ_2 104 128 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00950 Vifa-Chr5 280441718 280444235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00950 1 773 Receptor kinase-like Gene Family AT5G56040 47.022 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g00950 PK_Tyr_Ser-Thr 4.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00950 - - gmx:100794698 1263.06