Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00947 ATGGCATTTCTCAAAACCCTTCTCTCTCTCTACATTCCCTTCCTTTTCATCTTCTGTTTCTTCAACAAAGCCTCAACAAAATCCATTCCTCCAACCACTTCCTCTGATGTTCAACTCATCTTATTCAAAATCAAACCTTCACTCCAAGGCACCAATGAAAACCTCGTCCTCTCCTCATGGAACACCTCAACTCCTCTCTGTCAATGGAGAGGCCTCAAATGGGTCTTCACCAACGGTTCATCTCTCTCATGTACTGACCTCTCTTCACCTCAATGGAACAATCTTTCCTTCTCAAAAGACCCTTTTTTGCACTTGCTGTCTCTTCAACTCCCCTCTGCAAATCTCTCTGGTTCTCTCCCCAGAGAGCTCGGGCAGTTTCCTATGCTGCAAAGTCTTTACCTTAACATCAATTCATTGAGTGGAACCATTCCTCTTGAGCTTGGTTATGGCTCTTCACTTACTGATATTGATTTGAGTGACAATCTTTTGGTTGGTGACCTTCCACCTTCTGTATGGAACTTGTGTGATAAGCTTGTTTCTCTTAAGGTTCATGGAAATTCCTTATCTGGGTCTGTTCCAGAACCTGCATTACCTGATTCATCTTGTAAGGTTTTGCAGTTTCTTGATTTGGGTGGTAATAAATTTTCTGGTGATTTTCCTGTTTTTGTTACTAAATTTGGTGCTTTAAAAGAGCTTGATTTAGGGAGTAATATGTTTAGTGGTGCAATTTCTAATGGTTTGGTTGGACTTAGGTTAGAAAAATTGAATCTTTCTCATAATAATTTTAGTGGGGTTGTTCCGTTTTTCGGCGAATCGAAATTCGGTGTGGATTGTTTTGAAGGGAATAGTCCTGATTTGTGTGGTTCACCTTTGCGAAGTTGTGGTAAGAATTCTTCATTGAGTTCTGGTGCTGTTGCTGGTATTGTTATTAGTCTTATGACAGGTGCTGTTGTTTTGGCTTCTTTGTTGATTGGTTATATGCAAAACAAGAAGAAAAAGGGGAGTGGTGAGAGTGAAGATGAGTTGAATGATGATGAAGAGGATGAGGAGAACGGCGGTGGTGGTGGTTCCGTTGGTGGAAATGGTGGTGAAGGGAAGCTTATGTTGTTTGCTGGTGGTGAGAATTTGACACTTGATGATGTGTTGAATGCGACGGGACAAGTTATGGAGAAGACGTGTTATGGAACAGCTTATAAGGCTAAACTTGCGGATGGTGGGACAATCGCGTTGAGGTTGTTGAGAGAAGGGACATGCAAGGATAGGAGTTCGTGTTTGGCGGTTATTAAACAGTTGGGAAAAATTCGACACGAGAATTTGATTCCTCTGAGAGCTTTCTATCAAGGGAAAAGAGGAGAGAAGCTGCTTATTTATGATTATTTGCCTCTCAGAACTCTTCATGAACTTTTGCATGAAATTAAAGCAGGAAAACCAGTGCTAAATTGGGCAAGGAGACACAAGATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACGGGACTCGACGTTCCTATAACTCACGCAAACGTAAGATCCAAGAACGTGCTCGTAGACGACTTCTTCGTTGCAAGGATCACTGACTTCGCTCTCGATAAGCTAATGATCCCTTCCATAGCAGACGAAATGGTGGCACTCGCCAAGACAGACGGCTACAAGGCACCAGAGCTTCAAAGAATGAAGAAATGCAACTCAAGGACCGACGTCTACGCCTTCGGTATATTACTTCTCGAGATCTTAATCGGTAGGAAGCCTGGTAAGAACGGAAGAAGCGGCGAGTATATAGATTTACCTTCGATGGTGAAGGTAGCTGTTTTGGAGGAAACTACAATGGAAGTTTTCGACGTGGAACTGTTGAAAGGGATAAGAAGTCCAATGGAAGACGGGTTGGTTCAGGCGTTGAAGCTGGCGATGGGATGTTGTGCACCGGTGGCGTCGGTTAGACCGAGCATGGAGGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCAACTGAGACAAGAAGTGGAAGTATTACACCATTTTGA 2052 0.4303 MAFLKTLLSLYIPFLFIFCFFNKASTKSIPPTTSSDVQLILFKIKPSLQGTNENLVLSSWNTSTPLCQWRGLKWVFTNGSSLSCTDLSSPQWNNLSFSKDPFLHLLSLQLPSANLSGSLPRELGQFPMLQSLYLNINSLSGTIPLELGYGSSLTDIDLSDNLLVGDLPPSVWNLCDKLVSLKVHGNSLSGSVPEPALPDSSCKVLQFLDLGGNKFSGDFPVFVTKFGALKELDLGSNMFSGAISNGLVGLRLEKLNLSHNNFSGVVPFFGESKFGVDCFEGNSPDLCGSPLRSCGKNSSLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKKKGSGESEDELNDDEEDEENGGGGGSVGGNGGEGKLMLFAGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGTCKDRSSCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHELLHEIKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRSKNVLVDDFFVARITDFALDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGRKPGKNGRSGEYIDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00947 683 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
Vifa5g00947 683 SUPERFAMILY Protein kinase-like (PK-like) 392 659 IPR011009 -
Vifa5g00947 683 ProSiteProfiles Protein kinase domain profile. 383 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00947 683 MobiDBLite consensus disorder prediction 658 683 - -
Vifa5g00947 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 662 IPR046959 -
Vifa5g00947 683 Gene3D Ribonuclease Inhibitor 203 295 IPR032675 -
Vifa5g00947 683 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672|GO:0006468
Vifa5g00947 683 Gene3D Transferase(Phosphotransferase) domain 1 462 675 - -
Vifa5g00947 683 MobiDBLite consensus disorder prediction 332 362 - -
Vifa5g00947 683 MobiDBLite consensus disorder prediction 664 683 - -
Vifa5g00947 683 Gene3D Phosphorylase Kinase; domain 1 370 459 - -
Vifa5g00947 683 FunFam Leucine-rich repeat receptor-like protein kinase 202 294 - -
Vifa5g00947 683 SUPERFAMILY L domain-like 68 268 - -
Vifa5g00947 683 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 101 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00947 Vifa-Chr5 279289115 279291474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00947 4 683 Receptor kinase-like Gene Family AT3G24660 70.778 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa5g00947 PK_Tyr_Ser-Thr 9.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00947 - - gmx:100814814 1095.11