Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00943 ATGGAGTTACGGTTTGTATCACAGTTCATCTTCGGCATTCTCGTTATCGCGCTTCTTTTTTCTCTCACTACCAATGCAATCGATCACAAAGAATCGAGTGTTGTTGATGGAGAAGAGAAGTTGCAGATTCAGAGCTTGAAGAATTCGTCAATGGCGGAAAGCTTAAGTGACGCTTTAAACGAGCATGCTGTTGATAATCCAGAGGAACTTGCTTCCATGGTAGATACGACTATACGCAATCATACAGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAGGCGTTGGTCTTTCCGGCGAAAGAGATTGGCTGATTGCGCCATTGGTTTCGGTCGCAACGCCATAGGTGGCCGTGATGGAAAGTACTATGTTGTGTCGGACCCAAAAGACGATGACCCCGTGAACCCAAAACCAGGCACTCTCCGTCATGCCGTTATTCAAGATAGGCCCTTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTGAAGCAAGAACTGATCATGAACAGCTTTAAGACCATTGATGGTCGTGGTGCCAACGTTCATATTGCATTTGGAGCCGGCATTACTATCCAGTTTATCACCAATGTCATCATACATGGCGTTCATATTCATGATTGTAAGCCTACTGGGAATGCTATGGTTCGCAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGCCATATTTGGATTGATCACAACTCTCTTTCCAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGTTCCACTGCCATTACTATTTCCAATAATTATTTCACCCACCACAATGAGGTTATACTATTGGGTCACAGTGACTCATATGTCCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCTAGGTGCAGACATGGGTATTTCCACGTGGTAAACAATGACTATACCCATTGGGAGATGTATGCCATTGGAGGTAGTGCTGAACCCACAATTAACAGCCAAGGAAACAGATACCTTGCTCCTCAGAACCCTTTTGCTAAGGAGGTAACTAAGAGGGTGGACACAGGGTCCGGCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCCTTTTTCATTCCATCAGGAGCAGAAGCTGGAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTAGTAGGCTCCTTAACCTCAAGTGCTGGTGTTATTAGCTGTCGCAGGGGTGGCATGTGTTAA 1335 0.4569 MELRFVSQFIFGILVIALLFSLTTNAIDHKESSVVDGEEKLQIQSLKNSSMAESLSDALNEHAVDNPEELASMVDTTIRNHTERRNLNFFSCGTGNPMDDCWRCDRRWSFRRKRLADCAIGFGRNAIGGRDGKYYVVSDPKDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGAGITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGIWKGWNWRSEGDLLLNGAFFIPSGAEAGASYARASSLGAKSSSLVGSLTSSAGVISCRRGGMC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Vifa5g00943 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Vifa5g00943 444 Gene3D - 95 437 IPR012334 -
Vifa5g00943 444 SMART amb_all 170 367 IPR002022 -
Vifa5g00943 444 SUPERFAMILY Pectin lyase-like 73 438 IPR011050 -
Vifa5g00943 444 PANTHER PECTATE LYASE 18-RELATED 65 441 IPR045032 GO:0030570
Vifa5g00943 444 FunFam Pectate lyase 95 437 - -
Vifa5g00943 444 Pfam Pectate lyase 178 359 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00943 Vifa-Chr5 277882901 277888195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00943 42 444 Polysaccharide Lyase AT4G13710 77.129 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00943 K01728 - gmx:100809277 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00943 5 277882901 277888195 Vifa5g00943 5 277882901 277888195 ECH