Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00942 ATGGTAGTGATAGAGCAAGACAACACCGACGATCGAAACGCGAATCTATCAAACGCTACTGCCGGCAACGACGTCTCCGACGGCTTCGAAACCGCCAGTGAGGCCGATCTCGATAGCGACGGCGACGATGACATAGCAAGTAGTCGAGAAGAATTGCACCACTGCGATCAACCGCCGAAGCCGACAGAGGGAGAACAGGAACAAGATGTTCCTCAGAGAAGCGTTTCCTCTGAGGAGGCTTTAGTCAATGAAGATGAATTGAGACAGAAAGCATTGGGTGAAACAAATGAAGCAAAAGTAGAAGGTAACAGACTCTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACTAGACATGCCTTCATTTGTGGAAATACGCTCAATATGCTATGCAAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAGCTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATCCGTCGACTAGAGCCCCTTGCTGCAGTCAAACGGGAAAAAATGAAAGAAGAAATGATAGCAAAGTTGAAAGAAATGGGCAATTCTGTCTTGGGACGCTTTGGGATGAGCGTTGACAATTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 804 0.4316 MVVIEQDNTDDRNANLSNATAGNDVSDGFETASEADLDSDGDDDIASSREELHHCDQPPKPTEGEQEQDVPQRSVSSEEALVNEDELRQKALGETNEAKVEGNRLFVDGKYEEALSQYEHALQVALDMPSFVEIRSICYANRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00942 267 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 266 - -
Vifa5g00942 267 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Vifa5g00942 267 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Vifa5g00942 267 MobiDBLite consensus disorder prediction 46 67 - -
Vifa5g00942 267 MobiDBLite consensus disorder prediction 79 95 - -
Vifa5g00942 267 MobiDBLite consensus disorder prediction 1 95 - -
Vifa5g00942 267 SMART tpr_5 170 203 IPR019734 GO:0005515
Vifa5g00942 267 SMART tpr_5 136 169 IPR019734 GO:0005515
Vifa5g00942 267 Pfam Tetratricopeptide repeat 138 168 IPR001440 GO:0005515
Vifa5g00942 267 MobiDBLite consensus disorder prediction 31 45 - -
Vifa5g00942 267 Gene3D Tetratricopeptide repeat domain 59 235 IPR011990 GO:0005515
Vifa5g00942 267 Pfam Tetratricopeptide repeat 171 203 IPR013105 -
Vifa5g00942 267 MobiDBLite consensus disorder prediction 8 27 - -
Vifa5g00942 267 SUPERFAMILY TPR-like 97 212 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00942 Vifa-Chr5 276629876 276634281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00942 63 237 Calmodulin-binding Proteins AT3G25230 36.458 1.82e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00942 K24926 - gmx:100808386 375.17