Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00924 ATGGCTTTTACTTTAGGACATGCATTCTCACATATACTCATCTTTGTAGGTTCACTCTCAATATTCCTAGGTACCCCTTCCTCTTGTTTTAAACCCAAAAAACTTGTTATTGTTACTTCCAACTTCTCACCTCATTCAGATTCTTCATCATCAATGGCTACTTGGTATGGACCTCCCGACGGTGATGGAAGTGAAGGCGGTGCTTGTGGATATGGAAATGCTGTTGGCCTGTCTCCATTCAACTCAATGATATCAGCTGGAAGCCAATTCATCTTCCAAGAAGGCGAAGGATGTGGCTCTTGTTATGAGATTACGTGCACAGGAAATTCTGCATGCTCAGGAAACCCTGTGACAGTAGTTATAACTGATAAGTGTCCAGAGTGTAGTCATTATTTTGATTTGAGTGGCAAAGCTTTTAGTTCCATGGCAATTTCAGGTCAAGCTGAGAAGCTACGAACAGCTGGGAAAGTAGCAGTTCAATATCAAAGAGTTGCATGCAACTATCCTGGGGTATCAATAACTTTTCGTGTGGATCCTGGATCTAACCAACAATATTTTGCTATTGTAATTGAATATGAAGACGGGGATGGTGATCTCAAAACAGTTGAGCTCCAAGAAGACTCAGCAACATGGGAAGCCATGCAACGATCATGGGGTGCTGTTTGGAAATTTGATAAAGGGGCACTACTTCATGCACCATTTTCTATTAGGCTAACCACAATTGAGACTGGCAAAATCTTTGTTGCCAATAATGTGATCCCTGCAGGTTGGCAGCCTGGCCAAACTTTTAGGGCAGTTGGAAATTTTAATTAG 813 0.4182 MAFTLGHAFSHILIFVGSLSIFLGTPSSCFKPKKLVIVTSNFSPHSDSSSSMATWYGPPDGDGSEGGACGYGNAVGLSPFNSMISAGSQFIFQEGEGCGSCYEITCTGNSACSGNPVTVVITDKCPECSHYFDLSGKAFSSMAISGQAEKLRTAGKVAVQYQRVACNYPGVSITFRVDPGSNQQYFAIVIEYEDGDGDLKTVELQEDSATWEAMQRSWGAVWKFDKGALLHAPFSIRLTTIETGKIFVANNVIPAGWQPGQTFRAVGNFN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00924 270 Gene3D - 34 166 IPR036908 -
Vifa5g00924 270 Pfam Lytic transglycolase 85 161 IPR009009 -
Vifa5g00924 270 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Vifa5g00924 270 SUPERFAMILY Barwin-like endoglucanases 36 170 IPR036908 -
Vifa5g00924 270 PANTHER EXPANSIN-B3 37 265 - -
Vifa5g00924 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Vifa5g00924 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Vifa5g00924 270 Pfam Expansin C-terminal domain 173 254 IPR007117 -
Vifa5g00924 270 Gene3D - 167 265 IPR036749 -
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vifa5g00924 270 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vifa5g00924 270 SMART dpbb_1 84 161 IPR007112 -
Vifa5g00924 270 CDD DPBB_EXPB_N 53 166 - -
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vifa5g00924 270 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00924 Vifa-Chr5 273522128 273523193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00924 29 269 Expansin Gene Family AT1G65680 53.252 1.60e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00924 - - gmx:548090 369.777